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Series GSE83225 Query DataSets for GSE83225
Status Public on Jun 10, 2016
Title Studies of canine breed development on the island of Sardinia recapitulate genomic features of human population isolates [CANE]
Organism Canis lupus familiaris
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary The Italian island of Sardinia is well known in studies of human population isolates. It is also home to the Fonni's Dog, a breed of canine whose development was reliant on the functionality of the dog. Using genome-wide variant and sequence analyses, we have characterized the Fonni's Dog relative to 27 other dog breeds from the Mediterranean region. We determine introgression events relevant to Mediterranean breed development and describe how the Fonni's dog presents an intriguing model demonstrating the characteristics of traditional human population isolates and, in particular, exhibiting the unique demographic composition of the people of Sardinia.
 
Overall design 4 canine samples representing 1 dog breed
 
Contributor(s) Dreger DL, Davis BW, Cocco R, Sechi S, DiCerbo A, Parker HG, Polli M, Marelli SP, Crepaldi P, Ostrander EA
Citation(s) 27519604
Submission date Jun 10, 2016
Last update date Dec 19, 2016
Contact name Dayna Dreger
E-mail(s) dayna.dreger@nih.gov
Organization name National Institutes of Health
Department NHGRI
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL17481 Illumina CanineHD BeadChip
Samples (4)
GSM2196600 CANE [27048]
GSM2196601 CANE [27352]
GSM2196602 CANE [28921]
This SubSeries is part of SuperSeries:
GSE83160 Studies of canine breed development on the island of Sardinia recapitulate genomic features of human population isolates
Relations
BioProject PRJNA325284

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83225_CANE_Matrix_signal_intensities.txt.gz 9.6 Mb (ftp)(http) TXT
GSE83225_RAW.tar 10.6 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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