|
Status |
Public on Mar 28, 2017 |
Title |
Cellular model of colon cancer progression reveals signatures of mRNAs, miRNA, lncRNAs and epigenetic modifications associated with metastasis. |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Methylation profiling by genome tiling array Non-coding RNA profiling by array
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
|
|
Citation(s) |
28130225 |
|
Submission date |
Aug 16, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Matjaz Rokavec |
E-mail(s) |
matjaz.rokavec@med.uni-muenchen.de
|
Organization name |
Ludwig-Maximilians-University Munich
|
Department |
Institute of Pathology
|
Lab |
Hermeking
|
Street address |
Thalkirchner Str. 36
|
City |
Munich |
ZIP/Postal code |
80337 |
Country |
Germany |
|
|
Platforms (3) |
GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
GPL21576 |
Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (Probe Name version) |
|
Samples (18)
|
GSM2274911 |
parental DLD1 colorectal cancer cell line |
GSM2274912 |
SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line |
GSM2274913 |
SPH (mesenchymal-like DLD1 derivative) colorectal cancer cell line |
GSM2274914 |
METS (metastasis-derived DLD1 derivative) colorectal cancer cell line |
GSM2281354 |
total RNA from parental DLD1 colorectal cancer cell line |
GSM2281356 |
total RNA DNA from SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line |
GSM2281361 |
total RNA DNA from SPH (mesenchymal-like DLD1 derivative) colorectal cancer cell line |
GSM2281364 |
total RNA DNA from METS (metastasis-derived DLD1 derivative) colorectal cancer cell line |
GSM2281602 |
parental DLD1 colorectal cancer cell line, replicat 1 |
GSM2281603 |
parental DLD1 colorectal cancer cell line, replicat 2 |
GSM2281604 |
SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line, replicat 1 |
GSM2281605 |
SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line, replicat 2 |
GSM2281606 |
SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line, replicat 3 |
GSM2281607 |
SPH (mesenchymal-like DLD1 derivative) colorectal cancer cell line, replicat 1 |
GSM2281608 |
SPH (mesenchymal-like DLD1 derivative) colorectal cancer cell line, replicat 2 |
GSM2281609 |
METS (metastasis-derived DLD1 derivative) colorectal cancer cell line, replicat 1 |
GSM2281610 |
METS (metastasis-derived DLD1 derivative) colorectal cancer cell line, replicat 2 |
GSM2281611 |
METS (metastasis-derived DLD1 derivative) colorectal cancer cell line, replicat 3 |
|
This SuperSeries is composed of the following SubSeries:
|
GSE85529 |
DNA methylation profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis. |
GSE85685 |
RNA profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis. |
GSE85687 |
microRNA profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis. |
GSE85766 |
Cellular model of colon cancer progression reveals signatures of mRNAs, miRNA, lncRNAs and epigenetic modifications associated with metastasis. |
|
Relations |
BioProject |
PRJNA339061 |