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Series GSE85688 Query DataSets for GSE85688
Status Public on Mar 28, 2017
Title Cellular model of colon cancer progression reveals signatures of mRNAs, miRNA, lncRNAs and epigenetic modifications associated with metastasis.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by genome tiling array
Non-coding RNA profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 28130225
Submission date Aug 16, 2016
Last update date May 15, 2019
Contact name Matjaz Rokavec
E-mail(s) matjaz.rokavec@med.uni-muenchen.de
Organization name Ludwig-Maximilians-University Munich
Department Institute of Pathology
Lab Hermeking
Street address Thalkirchner Str. 36
City Munich
ZIP/Postal code 80337
Country Germany
 
Platforms (3)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL21576 Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (Probe Name version)
Samples (18)
GSM2274911 parental DLD1 colorectal cancer cell line
GSM2274912 SA (mesenchymal-like DLD1 derivative) colorectal cancer cell line
GSM2274913 SPH (mesenchymal-like DLD1 derivative) colorectal cancer cell line
This SuperSeries is composed of the following SubSeries:
GSE85529 DNA methylation profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis.
GSE85685 RNA profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis.
GSE85687 microRNA profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis.
Relations
BioProject PRJNA339061

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85688_RAW.tar 244.2 Mb (http)(custom) TAR (of IDAT, TXT)
SRA Run SelectorHelp

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