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Series GSE87544 Query DataSets for GSE87544
Status Public on Mar 29, 2017
Title Single-cell RNA-seq reveals hypothalamic cell diversity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed single-cell RNA-seq of mouse hypothalamus to reveal the cell diversity of this region.
Overall design Hypothalamus of mice (kept in normal condition or food deprivation) were dissected for single-cell RNA-seq through Drop-seq technique.
Contributor(s) Chen R, Wu X, Jiang L, Zhang Y
Citation(s) 28355573
Submission date Oct 02, 2016
Last update date May 15, 2019
Contact name Xiaoji Wu
Organization name Boston Children's Hospital
Department PCMM
Lab Yi Zhang
Street address 149G Warren Alpert Building, 200 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (17)
GSM2333577 B0-normal1-#1-200cells
GSM2333578 B0-normal2-#1-200cells
GSM2333579 B1-FD-#1-300cells
BioProject PRJNA345147
SRA SRP090730

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87544_1443737Cells.Expresssion.Matrix.log_tpm+1_.renamed.RData.gz 48.7 Mb (ftp)(http) RDATA
GSE87544_1443737Cells.SVM.cluster.identity.renamed.csv.gz 130.2 Kb (ftp)(http) CSV
GSE87544_Merged_17samples_14437cells_count.txt.gz 23.8 Mb (ftp)(http) TXT
GSE87544_RAW.tar 30.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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