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Series GSE8890 Query DataSets for GSE8890
Status Public on Apr 11, 2008
Title CG Methylation of Col, Van and reciprocal hybrids using HpaII and MspI digestion
Organism Arabidopsis thaliana
Experiment type Methylation profiling by genome tiling array
Summary CG Methylation of Col, Van and reciprocal hybrids using HpaII and MspI digestion followed by bioprime random labeling, and hybridization to AtTILE1 forward array.
Study on constitutive and ploymorphic CG methylation between arabidopsis thaliana accessions Col-0 and Van-0. Study on the inheritance of CG methylation in reciprocal hybrids.
Keywords: genomic hybridization
 
Overall design Each genotype by enzyme combination has four replicates, Single chanel. Total four genotypes (Col, Van, Col female x Van male, Van female x Col male). Two enzyme treatments (HpaII, MspI). Total 32 samples.
 
Contributor(s) Zhang X, Shiu S, Borevitz JO
Citation(s) 18369451
Submission date Aug 28, 2007
Last update date Mar 17, 2012
Contact name Justin Borevitz
E-mail(s) borevitz@uchicago.edu
Phone (773)702-5948
URL http://naturalsystems.org/lab
Organization name University of Chicago
Department Ecology and Evolution
Lab Borevitz
Street address 1101 E.57th St.
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL1979 AtTile1F to Arabidopsis Tiling 1.0F
Samples (32)
GSM225170 Col_Seedling_78h_HpaII_rep1
GSM225172 Col_Seedling_78h_MspI_rep1
GSM225195 Col_Seedling_78h_HpaII_rep2
Relations
BioProject PRJNA102273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8890_RAW.tar 769.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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