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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 28, 2016 |
| Title |
Transcriptional response of small-intestinal lamina propria CD4+ T cells to bacterial colonization |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We analyzed the transcriptional profile of small-intestinal lamina propria (SI-LP) CD4+ T cells isolated from germ-free and mice monocolonized with Bifidobacterium adolescentis, SFB, and Nexabiotic (a 23-strain, Th17-inducing, probiotic mix).
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| Overall design |
CD4+ T cells were double-sorted from mice directly into lysis buffer.
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| Contributor(s) |
Tan TG, Geva-Zatorsky N, Sefik E, Kua L, Naskar D, Teng F, Pasman L, Ortiz-Lopez A, Jupp R, Wu HJ, Kasper DL, Benoist C, Mathis D |
| Citation(s) |
27911839 |
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| Submission date |
Oct 27, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
CBDM Lab |
| E-mail(s) |
cbdm@hms.harvard.edu
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| Phone |
617-432-7747
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| Organization name |
Harvard Medical School
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| Department |
Microbiology and Immunobiology
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| Lab |
CBDM
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| Street address |
77 Avenue Louis Pasteur
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA350847 |
| SRA |
SRP092209 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE89261_Gene_count_table.csv.gz |
285.1 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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