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Series GSE89431 Query DataSets for GSE89431
Status Public on Jul 18, 2017
Title VDR ChIP-seq in human monocytic THP-1 cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq for VDR in THP-1 cells after stimulation with the the natural VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
Overall design THP-1 cells were treated for 2 or 24 h with 100 nM 1,25(OH)2D3 or vehicle before ChIP assay
Contributor(s) Seuter S, Neme A, Carlberg C
Citation(s) 28712921, 28232093, 28870774, 33753848, 35325193
Submission date Nov 02, 2016
Last update date Apr 27, 2022
Contact name Carsten Carlberg
Organization name University of Eastern Finland
Department Institute of Biomedicine
Street address Yliopistonranta 1D
City Kuopio
ZIP/Postal code 70211
Country Finland
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (12)
GSM2371442 THP-1, VDR 2 h EtOH replicate 1
GSM2371443 THP-1, VDR 2 h 1,25(OH)2D3 replicate 1
GSM2371444 THP-1, VDR 2 h EtOH replicate 2
BioProject PRJNA352200
SRA SRP092443

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89431_RAW.tar 1.9 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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