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Series GSE89449 Query DataSets for GSE89449
Status Public on Nov 02, 2018
Title Below ground attack by root knot nematode Meloidogyne graminicola predisposes rice to blast disease
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Summary Magnaporthe oryzae (rice blast) and the root-knot nematode Meloidogyne graminicola are causing two of the most important pathogenic diseases jeopardizing rice production. Here, we show that root-knot nematode infestation on rice roots leads to important above-ground changes in plant immunity gene expression, which is correlated with significantly enhanced susceptibility to blast disease.
Overall design Differential expression analysis between controls rice shoots and shoots from root knot nematode (M. graminicola) infected rice at two time points.
Contributor(s) Kyndt T, Zemene HY, Haeck A, Singh R, De Vleesschauwer D, Denil S, De Meyer T, Höfte M, Demeestere K, Gheysen G
Citation(s) 28151048
Submission date Nov 02, 2016
Last update date May 15, 2019
Contact name Jeroen Galle
Organization name Ghent University
Department Dept. Of Mathematical Modelling, Statistics and Bioinformatics
Lab Biobix, Lab of Bioinformatics and Computational Genomics
Street address Coupure Links 653
City Ghent
ZIP/Postal code 9000
Country Belgium
Platforms (1)
GPL15370 Illumina Genome Analyzer IIx (Oryza sativa Japonica Group)
Samples (4)
GSM2372369 Mg3L2
GSM2372370 Mg3L1
GSM2372371 Mg7L8
BioProject PRJNA352238
SRA SRP092466

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Supplementary file Size Download File type/resource
GSE89449_Kyndt_et_al_2016_raw_counts.txt.gz 2.7 Mb (ftp)(http) TXT
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