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Series GSE89494 Query DataSets for GSE89494
Status Public on Sep 01, 2017
Title Whole genome transcriptional responses to aluminum stress in rice roots
Organism Oryza sativa
Experiment type Expression profiling by high throughput sequencing
Summary We used RNA-Seq to perform a whole transcriptome analysis in roots of Azucena (tropical japonica), IR64 (indica), and the near-isogenic lines AZU[IR64121] and IR64[AZU12.1] in control conditions and treated with 80 μM Al3+ activity for 4 hours
Overall design Four independent biological replicates per genotype per treatment were analyzed
Web link
Contributor(s) Arbelaez JD, Maron LG, Jobe TO, Fei Z, Kochian LV, McCouch SR
Citation(s) 31245663
Arbelaez JD, Maron LG, Jobe TO, et al. ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (O. sativa). Plant Direct. 2017;00:1
Submission date Nov 03, 2016
Last update date Jul 01, 2019
Contact name Susan R. McCouch
Phone 607-255-0420
Organization name Cornell University
Department Plant Breeding & Genetics
Lab McCouch RiceLab
Street address 162 Emerson Hall
City Ithaca
State/province NY
ZIP/Postal code 14853
Country USA
Platforms (1)
GPL13160 Illumina HiSeq 2000 (Oryza sativa)
Samples (32)
GSM2373864 1_rep1_IR64_control
GSM2373865 2_rep1_ IR64NIL_control
GSM2373866 3_rep1_Azucena_control
BioProject PRJNA352557
SRA SRP092623

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89494_ART1_RNAseqRawCounts.xlsx 6.3 Mb (ftp)(http) XLSX
GSE89494_all.locus_brief_info.7.0.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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