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Series GSE89549 Query DataSets for GSE89549
Status Public on Jul 10, 2017
Title RNA-Seq Analysis of the Transcriptomes of Tomato+ and Tomato- HNSCC cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The role of this study is to compare the global gene expression profiles between Bmi1+ Cancer stem cells and Bmi1- cancer cells
Overall design Oral cancer from Bmi1CreER;tdTomato mouse treated with 4NQO for 26 weeks were havested 24 hr after tamoxifen injection. Tumor tissues were dissociated into single cell suspension and FACS-sorted based on the tomato expression. mRNA were isolated from sorted cells and RNAseq were performed.
Citation(s) 28285905
Submission date Nov 04, 2016
Last update date May 15, 2019
Contact name Cunyu Wang
Phone 3108256317
Organization name UCLA
Department School of Dentistry
Lab CHS 56-200
Street address 10833 Le Conte Ave
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (4)
GSM2375752 EpCAM+Tomato- _1
GSM2375753 EpCAM+Tomato- _2
GSM2375754 EpCAM+Tomato+ _1
BioProject PRJNA352529
SRA SRP092608

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Supplementary file Size Download File type/resource
GSE89549_gene_exp.xlsx 3.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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