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Series GSE90271

Query DataSets for GSE90271

Status

Public on Dec 07, 2016

Title

total RNA-seq from mesenchymal stem cell of adipose (ENCSR000CTZ)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from mesenchymal adipose derived stem cells, hMSC-AT isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000CTZ/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Nov 22, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL11154

Illumina HiSeq 2000 (Homo sapiens)

Samples (2)

GSM2400238	total RNA-seq from mesenchymal stem cell of adipose (ENCLB555ATX)
GSM2400239	total RNA-seq from mesenchymal stem cell of adipose (ENCLB555ALU)

Relations

Supersedes

GSM981260

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE90271_ENCFF000GGB_contigs_hg19.bigBed	34.1 Mb	(ftp)(http)	BIGBED
GSE90271_ENCFF000GGC_exon_quantifications_hg19.gtf.gz	19.4 Mb	(ftp)(http)	GTF
GSE90271_ENCFF000GGF_gene_quantifications_hg19.gtf.gz	5.8 Mb	(ftp)(http)	GTF
GSE90271_ENCFF000GGG_exon_quantifications_hg19.gtf.gz	19.7 Mb	(ftp)(http)	GTF
GSE90271_ENCFF000GGI_gene_quantifications_hg19.gtf.gz	1.8 Mb	(ftp)(http)	GTF
GSE90271_ENCFF000GGK_splice_junctions_hg19.bigBed	12.1 Mb	(ftp)(http)	BIGBED
GSE90271_ENCFF000GGO_transcript_quantifications_hg19.gtf.gz	6.4 Mb	(ftp)(http)	GTF
GSE90271_ENCFF000GGP_transcript_quantifications_hg19.gtf.gz	4.9 Mb	(ftp)(http)	GTF
GSE90271_ENCFF736DAR_splice_junctions_hg19.bed.gz	11.0 Mb	(ftp)(http)	BED
GSE90271_ENCFF944ZHP_contigs_hg19.bed.gz	27.2 Mb	(ftp)(http)	BED
GSE90271_RAW.tar	4.5 Gb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file