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Series GSE91083 Query DataSets for GSE91083
Status Public on Dec 10, 2016
Title Structure and variation in microbiome from continuous and rotational Pinellia ternata cropping soils
Organisms uncultivated soil bacterium; Pinellia ternata
Experiment type Other
Summary We used wheat as rotational crop to assess the influence of continuous cropping on microbiome in Pinellia ternata rhizosphere and the remediation of rotational cropping to the impacted microbiota. Illumina high-throughput sequencing technology was utilized for this method to explore the rhizosphere microbial structure and diversity based on continuous and rotational cropping.
Overall design Greenhouse experiment was designed to reveal the difference in microbiome of rotational and continuous cropping soil; details provided in the readme.txt and supporting figure for experimental_design.pdf files.
Contributor(s) He Z, Dong J
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Submission date Dec 09, 2016
Last update date May 15, 2019
Contact name zhigui he
Phone 008613384950020
Organization name Northwest A & F University, College of Life Sciences
Street address 5
City yangling
ZIP/Postal code 712100
Country China
Platforms (2)
GPL22769 Illumina MiSeq (Pinellia ternata)
GPL22770 Illumina MiSeq (uncultivated soil bacterium)
Samples (54)
GSM2420701 G1LY1p1
GSM2420702 G1LY1b1
GSM2420703 G1LY1e1
BioProject PRJNA356841
SRA SRP094832

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE91083_OTU_expression.xlsx 50.0 Mb (ftp)(http) XLSX
GSE91083_dt.xlsx 14.0 Kb (ftp)(http) XLSX
GSE91083_readme.txt 4.9 Kb (ftp)(http) TXT
GSE91083_supporting_figure_for_experimental_design.pdf 732.5 Kb (ftp)(http) PDF
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Raw data are available in SRA
Processed data are available on Series record

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