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Series GSE92982 Query DataSets for GSE92982
Status Public on Dec 29, 2016
Title Ralstonia solanacearum UY031 base modification detection and motif analysis
Organism Ralstonia solanacearum
Experiment type Methylation profiling by high throughput sequencing
Summary Examination of modified bases on the genome of Ralstonia solanacearum UY031
Overall design Motif detection was performed using RS_Modification_and_Motif_analysis.1 protocol from SMRT Analysis using QV threshold of 30
Contributor(s) Guarischi-Sousa R, Setubal JC
Citation(s) 28450872
BioProject PRJNA278086
Submission date Dec 28, 2016
Last update date May 15, 2019
Contact name Joao C Setubal
Organization name University of Sao Paulo
Department Biochemistry
Lab Setubal's lab
Street address Av. Prof. Lineu Prestes, 748
City Sao Paulo
State/province Sao Paulo
ZIP/Postal code 05508000
Country Brazil
Platforms (1)
GPL22867 PacBio RS II (Ralstonia solanacearum)
Samples (1)
GSM2441457 RSUY031_methylome
SRA SRP064191

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE92982_RAW.tar 143.3 Mb (http)(custom) TAR (of CSV, GFF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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