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Series GSE94121 Query DataSets for GSE94121
Status Public on Oct 12, 2017
Title The transcriptome of estrogen-independent mammary growth induced by dietary conjugated linoleic acid
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA sequencing confirmed that both E and CLA increased the expression of genes involved in proliferation and cell cycle progression. The transcriptome of the mammary glands from E-treated mice was characterized by canonical E-induced genes including Pgr and Areg, whereas CLA differentially regulated the expression of genes implicated in inflammation – a finding in-line with perturbation of the mammary stroma stimulated by CLA.
Overall design A total of 8 groups (Control_60h, Estrogen_60h, Control_84h, Estrogen_84h, Control 108h, CLA_108h, Control_132h, CLA_132h) were analyzed with 5 biological replicates per group for a total of 40 samples.
Contributor(s) Berryhill GE, Hovey RC
Citation(s) 28938404
Submission date Jan 26, 2017
Last update date May 15, 2019
Contact name Grace E Berryhill
Phone 5307524970
Organization name University of California, Davis
Department Animal Science
Lab Russell C Hovey Laboratory
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (40)
GSM2470071 Control_60h (41-11)
GSM2470072 Control_84h (41-17)
GSM2470073 Control_84h (41-19)
BioProject PRJNA368980
SRA SRP097921

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94121_CountEarly_use.txt.gz 866.9 Kb (ftp)(http) TXT
GSE94121_CountLate_use.txt.gz 852.9 Kb (ftp)(http) TXT
GSE94121_Early_RPKM_export_07_09_2016.txt.gz 2.8 Mb (ftp)(http) TXT
GSE94121_Late_RPKM_export_07_09_2016.txt.gz 2.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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