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Series GSE9469 Query DataSets for GSE9469
Status Public on Jan 24, 2008
Title Copy Number Analysis of Renal Epithelial Neoplasms
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Renal tumors with complex morphology require extensive workup for accurate classification. Chromosomal aberrations that define subtypes of renal epithelial neoplasms have been reported. We explored if whole-genome chromosome copy number and loss-of-heterozygosity analysis with single nucleotide polymorphism (SNP) arrays can be used to identify these aberrations.
Keywords: Chromosome copy number and LOH analysis with SNP Genotyping Arrays
 
Overall design We analyzed 20 paraffin-embedded tissues representing conventional renal cell carcinoma (RCC), papillary RCC, chromophobe RCC, and oncocytoma with Affymetrix GeneChip 10K 2.0 Mapping arrays.
 
Contributor(s) Monzon FA, Hagenkord J, Lyons-Weiler M, Balani JP, Parwani AV, Sciulli CM, Li J, Chandran U, Bastacky S, Dhir R
Citation(s) 18246049, 18990225
Submission date Oct 30, 2007
Last update date Mar 17, 2012
Contact name Federico A Monzon
E-mail(s) famonzon@tmhs.org
Organization name The Methodist Hospital Research Institute
Department Pathology
Street address 6565 Fannin St., MS205
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL2641 [Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array
Samples (20)
GSM240385 CHRCC1
GSM240386 CHRCC2
GSM240387 CHRCC3
Relations
BioProject PRJNA103239

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9469_RAW.tar 40.3 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table

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