|
Status |
Public on Feb 13, 2018 |
Title |
Multi-time series RNA-Seq analysis of Enterobacter lignolyticus SCF1during growth in lignin-amended medium |
Organism |
[Enterobacter] lignolyticus SCF1 |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
The production of lignocellulosic-derived biofuels is a highly promising source of alternative energy, but it has been constrained by the lack of a microbial platform capable to efficiently degrade this recalcitrant material and cope with by-products that can be toxic to cells. Species that naturally grow in environments where carbon is mainly available as lignin are promising for finding new ways of removing the lignin that protects cellulose for improved conversion of lignin to fuel precursors.
|
|
|
Overall design |
Genome-wide transcriptomic analysis of cultures of SCF-1 were sampled along three times during batch anaerobic batch growth in lignin amended medium versus control (unamended medium).
|
|
|
Contributor(s) |
Orellana R, Markillie LM, Mitchell H, Orr G, DeAngelis KM |
Citation(s) |
29049419 |
|
Submission date |
Mar 20, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Lye Meng Markillie |
E-mail(s) |
Meng.markillie@pnnl.gov
|
Phone |
509 371 7300
|
Organization name |
Environmental Molecular Sciences Laboratory
|
Department |
Biosystems Dynamics & Simulation
|
Lab |
Cell Isolation and Systems Analysis
|
Street address |
902 Battelle Blvd
|
City |
Richland |
State/province |
WA |
ZIP/Postal code |
99352 |
Country |
USA |
|
|
Platforms (1) |
GPL23197 |
AB 5500xl Genetic Analyzer (Enterobacter lignolyticus SCF1) |
|
Samples (18)
|
|
Relations |
BioProject |
PRJNA379844 |
SRA |
SRP102196 |