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Series GSE97883 Query DataSets for GSE97883
Status Public on Apr 18, 2017
Title Tn-seq experiment with sub-inhibitory concentrations of WhiB7-specific antibiotics in Mycobacterium smegmatis
Organism Mycolicibacterium smegmatis
Experiment type Other
Summary A pool of ~55,000 transposon mutants was exposed to sub-MIC antibiotics to monitor for conditionally essential genes under all selections with the hypothesis the genes would be positive regulators of WhiB7
 
Overall design Tn-seq of Mycobacterium smegmatis untreated or treated with one of the following antibiotics: Roxithromycin, Chloramphenicol, or Tetracycline.
 
Contributor(s) Burian J, Thompson CJ
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Submission date Apr 17, 2017
Last update date May 15, 2019
Contact name Charles Thompson
E-mail(s) charles.thompson@ubc.ca
Phone 1-604-822-2501
Organization name University of British Columbia
Department Microbiology and Immunology
Lab Thompson
Street address 2350 Health Sciences Mal
City Vancouver
State/province British Columbia
ZIP/Postal code V6T 1Z3
Country Canada
 
Platforms (1)
GPL22354 Illumina MiSeq (Mycobacterium smegmatis)
Samples (4)
GSM2579558 untreated library
GSM2579559 treated with Roxithromycin 2ug/mL
GSM2579560 treated with Chloramphenicol 15ug/mL
Relations
BioProject PRJNA383139
SRA SRP104138

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97883_ESSENTIALS.xlsx 793.0 Kb (ftp)(http) XLSX
GSE97883_Protocol.pdf 185.6 Kb (ftp)(http) PDF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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