|
| Status |
Public on Nov 13, 2017 |
| Title |
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation |
| Organisms |
Homo sapiens; human gammaherpesvirus 4; human papillomavirus 31; Human gammaherpesvirus 8; Human papillomavirus 16 |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
29142137 |
| |
| Submission date |
Apr 24, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
JJ Miranda |
| E-mail(s) |
jmiranda@barnard.edu
|
| Organization name |
Barnard College, Columbia University
|
| Street address |
3009 Broadway
|
| City |
New York |
| ZIP/Postal code |
10027 |
| Country |
USA |
| |
|
| Platforms (6)
|
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL22767 |
Illumina HiSeq 2500 (Homo sapiens; Human papillomavirus type 16) |
| GPL23185 |
Illumina HiSeq 2500 (Homo sapiens; Human gammaherpesvirus 4) |
| GPL23360 |
Illumina HiSeq 2500 (Homo sapiens; Human gammaherpesvirus 4; Human gammaherpesvirus 8) |
| GPL23361 |
Illumina HiSeq 2500 (Homo sapiens; Human papillomavirus type 31) |
| GPL23362 |
Illumina HiSeq 4000 (Homo sapiens; Human gammaherpesvirus 4) |
|
| Samples (46)
|
| GSM2587490 |
KemIII HiC rep 2 |
| GSM2587491 |
RaeI HiC rep 1 |
| GSM2587492 |
RaeI HiC rep 2 |
| GSM2587493 |
Raji HiC rep 1 |
| GSM2587494 |
Raji HiC rep 2 |
| GSM2587495 |
Namalwa HiC rep 1 |
| GSM2587496 |
Namalwa HiC rep 2 |
| GSM2587497 |
BC-1 KSHV HiC rep 1 |
| GSM2587498 |
BC-1 KSHV HiC 2 rep 2 |
| GSM2587499 |
20863 HiC rep 1 |
| GSM2587500 |
20863 HiC rep 2 |
| GSM2587501 |
9E HiC rep 1 |
| GSM2587502 |
9E HiC rep 2 |
| GSM2587503 |
K562_pD stable HiC rep 1 |
| GSM2587504 |
K562_pD stable HiC rep 2 |
| GSM2587505 |
K562_pD transient HiC |
| GSM2587506 |
K562_pDdE transient HiC |
| GSM2587508 |
RaeI shEBNA1 HiC |
| GSM2587509 |
Akata-Tet Z, LGNFR+ HiC rep 1 |
| GSM2587510 |
Akata-Tet Z, LGNFR- HiC rep 1 |
| GSM2587511 |
Akata-Tet Z, LGNFR+ HiC rep 2 |
| GSM2587512 |
Akata-Tet Z, LGNFR- HiC rep 2 |
| GSM2587513 |
Akata-Tet Z, LGNFR+ HiC rep 3 |
| GSM2587514 |
Akata-Tet Z, LGNFR- HiC rep 3 |
| GSM2587515 |
Akata-Tet Z, LGNFR+ HiC rep 4 |
| GSM2587516 |
Akata-Tet Z, LGNFR- HiC rep 4 |
| GSM2587517 |
Akata-Tet Z, LGNFR+ HiC rep 5 |
| GSM2587518 |
Akata-Tet Z, LGNFR- HiC rep 5 |
| GSM2587519 |
BZLF1 ChIP-seq |
| GSM2587520 |
EBNA1 ChIP-seq |
| GSM2587521 |
Namalwa RNA-seq rep 1 |
| GSM2587522 |
Namalwa RNA-seq rep 2 |
| GSM2597432 |
ATZ LGNFR+ DNA seq rep 1 |
| GSM2597433 |
ATZ LGNFR- DNA seq rep 1 |
| GSM2597434 |
ATZ LGNFR+ DNA seq rep 2 |
| GSM2597435 |
ATZ LGNFR- DNA seq rep 2 |
| GSM2597436 |
ATZ LGNFR+ DNA seq rep 3 |
| GSM2597437 |
ATZ LGNFR- DNA seq rep 3 |
| GSM2597438 |
ATZ LGNFR+ DNA seq rep 4 |
| GSM2597439 |
ATZ LGNFR- DNA seq rep 4 |
| GSM2597440 |
ATZ LGNFR+ DNA seq rep 5 |
| GSM2597441 |
ATZ LGNFR- DNA seq rep 5 |
| GSM2844408 |
RaeI shCTRL HiC |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE98120 |
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [HiC-seq] |
| GSE98121 |
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [ChIP-seq] |
| GSE98122 |
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [RNA-seq] |
| GSE98498 |
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation [DNA-seq] |
|
| Relations |
| BioProject |
PRJNA384029 |
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