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Series GSE99090 Query DataSets for GSE99090
Status Public on May 20, 2017
Title SNP genotyping of ǂKhomani San
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Summary 48 ǂKhomani San living in the South African Kalahari were genotyped using the Illumina OmniExpress, OmniExpress Plus, and HumanHap550 arrays
 
Overall design Genomic DNA was hybridized to the Illumina OmniExpress, OmniExpress Plus, and HumanHap550 arrays
 
Contributor(s) Gopalan S, Henn B
Citation(s) 28533441, 39253488
Submission date May 19, 2017
Last update date Oct 08, 2024
Contact name Shyamalika Gopalan
E-mail(s) shyamalika.gopalan@stonybrook.edu
Organization name Stony Brook University
Street address 100 Nicolls Road
City Stony Brook
ZIP/Postal code 11794
Country USA
 
Platforms (3)
GPL6982 Illumina HumanHap550-Duov3 Genotyping BeadChip (HumanHap550-2v3_B)
GPL18900 HumanOmniExpress-12v1 BeadChip
GPL20333 Illumna HumanOmniExpressExome-8 v1.2
Samples (48)
GSM2632137 saliva derived genomic DNA [SA009]_SNP_genotype
GSM2632138 saliva derived genomic DNA [SA039]_SNP_genotype
GSM2632139 saliva derived genomic DNA [SA003]_SNP_genotype
This SubSeries is part of SuperSeries:
GSE99091 Genome-wide DNA methylation and SNP genotyping of ǂKhomani San
Relations
BioProject PRJNA387274

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99090_GEO_SA_geno.bed.data.gz 2.1 Mb (ftp)(http) DATA
GSE99090_GEO_SA_geno.bim.gz 3.3 Mb (ftp)(http) BIM
GSE99090_GEO_SA_geno.fam.gz 215 b (ftp)(http) FAM
GSE99090_RAW.tar 222.2 Mb (http)(custom) TAR
GSE99090_SA_data_for_GEO.map.gz 3.1 Mb (ftp)(http) MAP
GSE99090_SA_data_for_GEO.ped.gz 8.4 Mb (ftp)(http) PED
Processed data are available on Series record
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