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Series GSE99155 Query DataSets for GSE99155
Status Public on Aug 01, 2019
Title H3K36me3 protects the mouse epigenome from single nucleotide variations [mRNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The goals of this project are to study the transcriptome profiling (RNA-seq) of mouse embryonic stem cells by histone mutants incorporation (H3.1K3M, H3.1K36M vs H3.1wt) or shRNA-mediated knockdown of methyl-transferase Suv39h1/h2 (shSuv39h1, shSuv39h2 vs shNC)
Overall design mRNA profiles of mES stable cell lines with overexpression of H3.1WT, H3.1K9M, H3.1K36M and shNC, shSuv39h1, shSuv39h2 were generated by deep sequencing, in double, using Illumina next-generation sequencing.
Contributor(s) Sun F, Kang X, Chang J
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Submission date May 22, 2017
Last update date Jul 25, 2021
Contact name Jin Sun
Organization name Tongji University
Department life science and technology
Lab Jiang
Street address siping1239
City shanghai
ZIP/Postal code 200092
Country China
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (12)
GSM2634292 H3.1WT rep1
GSM2634293 H3.1WT rep2
GSM2634294 H3.1K9M rep1
This SubSeries is part of SuperSeries:
GSE99156 H3K36me3 protects the mouse epigenome from single nucleotide variations
BioProject PRJNA387443
SRA SRP107768

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99155_RAW.tar 1.7 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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