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Series GSE99413 Query DataSets for GSE99413
Status Public on Aug 15, 2017
Title RNAseq data for Arabidopsis TF mutants during germination
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary RNAseq profiling of eight transcription factor mutants during germination in Arabidopsis, at 24 h in the light (after 48h of stratification).
 
Overall design Total RNA was extracted from 50-100 mg Arabidopsis seeds in duplicates.
 
Contributor(s) Narsai R, Gouil Q
Citation(s) 28911330
Submission date May 30, 2017
Last update date May 15, 2019
Contact name Quentin Gouil
Organization name Walter and Eliza Hall
Department Epigenetics and Development
Lab Ritchie lab
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (18)
GSM2643667 Col-0 (wt) 24 hSL replicate 1
GSM2643668 Col-0 (wt) 24 hSL replicate 2
GSM2643669 athb15 24 hSL replicate 1
This SubSeries is part of SuperSeries:
GSE94459 methylC-seq, RNA-seq and sRNA-seq data over Arabidopsis thaliana germination
Relations
BioProject PRJNA388407
SRA SRP108261

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99413_gene_counts_mutants.txt.gz 2.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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