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GEO accession:
Series GSE99521
Query DataSets for GSE99521
Status
Public on Nov 16, 2017
Title
YY1 is a structural regulator of enhancer-promoter loops
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29224777
Submission date
May 31, 2017
Last update date
Jul 25, 2021
Contact name
Richard A Young
E-mail(s)
young_computation@wi.mit.edu
Phone
617-258-5219
Organization name
Whitehead Institute for Biomedical Research
Lab
Young Lab
Street address
9 Cambridge Center
City
Cambridge
State/province
MA
ZIP/Postal code
02142
Country
USA
Platforms (3)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (47)
Less...
More...
GSM2645350
DB7938357_Etv4_Prom_B3_mES_situ_rep1
GSM2645351
DB7938357_Etv4_Prom_B3_mES_situ_rep2
GSM2645352
DB7938357_Etv4_Prom_B3_mES_situ_rep3
GSM2645353
DB7938357_WT_mES_situ_rep1
GSM2645354
DB7938357_WT_mES_situ_rep2
GSM2645355
DB7938357_WT_mES_situ_rep3
GSM2645356
DC4688024_Raf1_Prom_G2_mES_situ.rep1
GSM2645357
DC4688024_Raf1_Prom_G2_mES_situ.rep2
GSM2645358
DC4688024_Raf1_Prom_G2_mES_situ.rep3
GSM2645359
DC4688024_WT_mES_situ_rep1
GSM2645360
DC4688024_WT_mES_situ_rep2
GSM2645361
DC4688024_WT_mES_situ_rep3
GSM2645362
mES_WT_0h_r1
GSM2645363
mES_WT_0h_r2
GSM2645364
mES_YY1_degraded_24h_r1
GSM2645365
mES_YY1_degraded_24h_r2
GSM2645432
281X_YY1
GSM2645433
YY1_Input
GSM2645434
HiChIP_K27ac_C3_WT-YY1_24_rep1
GSM2645435
HiChIP_K27ac_C3_WT-YY1_24_rep2
GSM2645436
HiChIP_K27ac_C3_WT-YY1_24_rep3
GSM2645437
HiChIP_K27ac_C3_YY1-degraded_24_rep1
GSM2645438
HiChIP_K27ac_C3_YY1-degraded_24_rep2
GSM2645439
HiChIP_K27ac_C3_YY1-degraded_24_rep3
GSM2645440
YY1_ChIAPET
GSM2645441
CTCF_ChIAPET
GSM2773992
DB7938357_Etv4_Prom_B3_dCas9_mES_situ_rep1
GSM2773993
DB7938357_Etv4_Prom_B3_dCas9_mES_situ_rep2
GSM2773994
DB7938357_Etv4_Prom_B3_dCas9_mES_situ_rep3
GSM2773995
DB7938357_Etv4_Prom_B3_dCas9-YY1_mES_situ_rep1
GSM2773996
DB7938357_Etv4_Prom_B3_dCas9-YY1_mES_situ_rep2
GSM2773997
DB7938357_Etv4_Prom_B3_dCas9-YY1_mES_situ_rep3
GSM2773998
ChIP_Jurkat_YY1
GSM2773999
ChIP_Jurkat_Input
GSM2774000
HiChIP_HCT116_YY1
GSM2774001
HiChIP_Jurkat_YY1
GSM2774002
HiChIP_K562_YY1
GSM2774003
HiChIP_mES_C3_UT_H3K27ac_rep1
GSM2774004
HiChIP_mES_C3_UT_H3K27ac_rep2
GSM2774005
HiChIP_mES_C3_UT_H3K27ac_rep3
GSM2774006
HiChIP_mES_C3_TR_H3K27ac_rep1
GSM2774007
HiChIP_mES_C3_TR_H3K27ac_rep2
GSM2774008
HiChIP_mES_C3_WO_H3K27ac_rep1
GSM2774009
HiChIP_mES_C3_WO_H3K27ac_rep2
GSM2774010
HiChIP_mES_C3_WO_H3K27ac_rep3
GSM2774584
scRNAseq_EB_noDrug
GSM2774585
scRNAseq_EB_yesDrug
This SuperSeries is composed of the following SubSeries:
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More...
GSE99515
YY1 is a structural regulator of enhancer-promoter loops [4C-Seq]
GSE99516
YY1 is a structural regulator of enhancer-promoter loops [RNA-Seq]
GSE99518
YY1 is a structural regulator of enhancer-promoter loops [ChIP-Seq]
GSE99519
YY1 is a structural regulator of enhancer-promoter loops [HiChIP]
GSE99520
YY1 is a structural regulator of enhancer-promoter loops [ChIA-PET]
GSE103574
YY1 is a structural regulator of enhancer-promoter loops [scRNA-seq]
Relations
BioProject
PRJNA388690
Download family
Format
SOFT formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE99521_RAW.tar
6.3 Gb
(http)
(custom)
TAR (of CLOUPE, CSV, TSV, WIG)
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