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Sample GSM10064 Query DataSets for GSM10064
Status Public on May 10, 2004
Title RRE2_LT2_H2O2_20min_3D125_2
Sample type RNA
 
Channel 1
Source name LT2 20mins post H2O2
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Extracted molecule total RNA
 
Channel 2
Source name LT2 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Extracted molecule total RNA
 
 
Description LT2 peroxide treatment time course
Keywords = Salmonella
 
Submission date Sep 16, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL331
Series (1)
GSE806 LT2_hydrogen_peroxide_2mM_RNA

Data table header descriptions
ID_REF
X_LOCATION
Y_LOCATION
CH1_MEAN
CH1_BKD_MEAN
CH1_SD
CH1_BKD_SD
CH1_DIAMETER
CH1_AREA
CH1_FOOTPRINT
CH1_CIRCULARITY
CH1_SPOT_UNIFORMITY
CH1_BKD_UNIFORMITY
CH1_SIGNAL_NOISE_RATIO
CH1_CONFIDENCE
CH2_MEAN
CH2_BKD_MEAN
CH2_SD
CH2_BKD_SD
CH2_DIAMETER
CH2_AREA
CH2_FOOTPRINT
CH2_CIRCULARITY
CH2_SPOT_UNIFORMITY
CH2_BKD_UNIFORMITY
CH2_SIGNAL_NOISE_RATIO
CH2_CONFIDENCE
CH1_DIAMETER_FILTER
CH1_AREA_FILTER
CH1_CIRCULARITY_FILTER
CH1_SPOT_UNIFORMITY_FILTER
CH1_BKD_UNIFORMITY_FILTER
CH1_SIGNAL_NOISE_RATIO_FILTER
CH2_DIAMETER_FILTER
CH2_AREA_FILTER
CH2_CIRCULARITY_FILTER
CH2_SPOT_UNIFORMITY_FILTER
CH2_BKD_UNIFORMITY_FILTER
CH2_SIGNAL_NOISE_RATIO_FILTER
IGNORE_FILTER
CH1_BKD_CORR
CH2_BKD_CORR
CH1%_OF_TOTAL
CH2%_OF_TOTAL
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE PRE_VALUE
1 2130 22510 10992.54688 119.161766 19163.48438 232.813461 190.32518 26700 24.412867 0.967999 0.500183 0.992691 47.216114 0.571638 2665.081055 548.102966 1780.675659 401.950958 145.818741 7400 24.412867 0.860638 0.953331 0.986359 6.630364 0.88413 1 1 1 0 1 1 1 1 1 1 1 1 1 10873.38511 2116.978089 0.482683695 0.05388024 3.1632503 8.95845483
2 2380 22510 359.924988 118.25 343.538635 235.576294 188.813965 16000 24.412867 0.964748 0.989319 0.993942 1.527849 0.407426 1260 482.426483 212.930435 334.150452 141.160202 3600 24.412867 0.796311 0.993332 0.990097 3.770757 0.826712 1 1 1 1 1 0 1 1 1 1 1 1 1 241.674988 777.573517 0.010728267 0.019790402 -0.8833843 0.542094432
3 2630 22510 314.055176 91.279411 259.25766 160.465256 190.992981 14500 24.412867 0.964726 0.992699 0.995743 1.957154 0.521908 1173.722168 417.794128 272.5383 314.042694 169.256897 3600 24.412867 0.902099 0.992249 0.990585 3.737461 0.825707 1 1 1 1 1 0 1 1 1 1 1 1 1 222.775765 755.92804 0.009889306 0.019239493 -0.9601303 0.514010736
4 2880 22510 311.206055 160.102936 246.559875 271.908752 191.159576 16500 24.412867 0.969268 0.992981 0.992043 1.144524 0.305206 1296.666626 482.691162 296.182648 374.644958 156.962387 3300 24.412867 0.862927 0.993248 0.989441 3.461055 0.816885 1 1 1 1 1 0 1 1 1 1 1 1 1 151.103119 813.975464 0.006707664 0.020716886 -1.6269253 0.323777613
5 3130 22510 373.266235 136.5 334.296936 238.329483 194.461365 15400 24.412867 0.979515 0.989746 0.993118 1.566177 0.417647 1175.681763 436.941162 271.98056 332.837006 155.945114 4400 24.412867 0.882999 0.990395 0.991661 3.532305 0.819243 1 1 1 1 1 0 1 1 1 1 1 1 1 236.766235 738.740601 0.010510361 0.018802047 -0.8390783 0.559000892
6 3370 22500 316.067566 100.117645 286.607971 214.283981 189.990387 14800 12.133564 0.968392 0.991028 0.993797 1.474994 0.393332 1089.036133 404.558838 298.687988 287.279175 181.42009 8300 12.133564 0.942936 0.991066 0.991867 3.790863 0.827314 1 1 1 1 1 0 1 1 1 1 1 1 1 215.949921 684.477295 0.009586298 0.017420965 -0.8617793 0.550273634
7 3620 22500 328.894745 163.044113 276.226685 314.81424 187.290573 17100 12.133564 0.967006 0.991684 0.99189 1.044726 0.278594 1160.084717 411.720581 318.656799 355.615112 146.254669 5900 12.133564 0.90777 0.990799 0.991669 3.262192 0.809965 1 1 1 1 1 0 1 1 1 1 1 1 1 165.850632 748.364136 0.007362325 0.01904698 -1.3713293 0.386535037
8 3870 22500 516.72583 151.088242 593.364807 263.634216 188.982483 18600 12.133564 0.972829 0.980576 0.992424 1.96001 0.522669 930.08197 312.161774 358.08783 301.094604 187.290573 12200 12.133564 0.9604 0.989326 0.991142 3.089002 0.803498 1 1 1 1 1 0 1 1 1 1 1 1 1 365.637588 617.920196 0.016231128 0.015726988 0.0455213 1.032055724
9 4110 22500 434.682922 196.794113 398.233765 301.556549 188.645309 12300 2.151881 0.96473 0.988457 0.991325 1.441464 0.38439 1225.085693 451.073517 394.178467 319.548492 156.352814 3500 2.151881 0.827453 0.984947 0.990929 3.833802 0.828585 1 1 1 1 1 0 1 1 1 1 1 1 1 237.888809 774.012176 0.010560193 0.019699761 -0.8995423 0.536056937
10 4380 22520 494.270599 153.205887 373.247345 226.422043 186.950348 17000 30.035976 0.961036 0.989151 0.99424 2.182961 0.582123 1051.036255 353.558838 379.969788 281.353577 180.187729 13800 30.035976 0.947779 0.988548 0.992561 3.735642 0.825652 1 1 1 1 1 0 1 1 1 1 1 1 1 341.064712 697.477417 0.015140306 0.017751837 -0.2295743 0.852886693
11 4630 22510 720.302734 116.279411 684.364319 229.700699 188.476501 21800 24.412867 0.967477 0.981331 0.993431 3.135832 0.80529 1439.069214 407.676483 567.281616 330.518433 181.068848 15900 24.412867 0.941575 0.984222 0.990929 4.353976 0.842618 1 1 1 1 1 1 1 1 1 1 1 1 1 604.023323 1031.392731 0.02681338 0.026250478 0.0306093 1.021443486
12 4890 22510 2163.004395 146.529419 4887.229492 291.335999 189.990387 23300 33.742863 0.968487 0.793724 0.990784 7.424432 0.836381 4716.510254 390.808838 12599.08496 319.70575 181.244553 14300 33.742863 0.951444 0.505577 0.991722 14.75266 0.577802 1 1 1 1 1 1 1 1 1 0 1 1 1 2016.474976 4325.701416 0.089513945 0.110095532 -0.2985723 0.813057012
13 5120 22510 2383.336426 165.338242 2023.720337 271.313538 188.307541 22000 15.918393 0.968965 0.951263 0.991386 8.784436 0.839441 3274.4104 393.382355 1993.488159 377.685059 183.166229 17300 15.918393 0.938997 0.948868 0.989113 8.669685 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 2217.998184 2881.028045 0.098459822 0.073326447 0.4252013 1.342760019
14 5380 22530 333.948151 168.573532 233.200867 269.275787 187.799744 13500 37.527748 0.964562 0.992378 0.992241 1.240171 0.330712 1241.176514 533.426453 212.200439 558.184692 102.490135 1700 37.527748 0.767134 0.995026 0.987022 2.223595 0.592959 1 1 1 1 1 0 1 0 1 1 1 0 1 165.374619 707.750061 0.007341194 0.018013291 -1.2949753 0.407543192
15 5620 22500 330.75 86.764709 285.150482 137.10527 190.32518 14800 12.133564 0.967736 0.991158 0.99678 2.41238 0.643301 789.212769 310.705872 288.002411 308.052368 187.460449 14100 12.133564 0.960749 0.990936 0.992599 2.561944 0.683185 1 1 1 1 1 0 1 1 1 1 1 0 1 243.985291 478.506897 0.010830824 0.012178712 -0.1692193 0.88932427
16 5880 22500 512.945374 129.882355 466.992096 217.913406 191.49231 18300 22.13179 0.969021 0.985374 0.993958 2.353895 0.627705 1321.416016 378.029419 535.165833 320.918182 179.479706 12500 22.13179 0.92638 0.985405 0.991142 4.11761 0.836537 1 1 1 1 1 0 1 1 1 1 1 1 1 383.063019 943.386597 0.017004665 0.024010592 -0.4977403 0.708215172
17 6130 22510 574.577698 98.617645 478.319977 216.167084 189.822784 20600 24.412867 0.965728 0.985779 0.99469 2.658026 0.708807 1076.327148 387 349.996124 339.085785 176.077789 10700 24.412867 0.903006 0.989761 0.991707 3.174203 0.806734 1 1 1 1 1 0 1 1 1 1 1 1 1 475.960053 689.327148 0.021128485 0.017544401 0.2681793 1.204286513
18 6380 22490 281.709473 149.132355 221.44931 233.816162 189.150833 14800 24.158731 0.960597 0.992767 0.994408 1.204833 0.321289 989.936523 329 1964.303589 284.07135 187.969162 12600 24.158731 0.973913 0.985146 0.992302 3.484816 0.817679 1 1 1 1 1 0 1 1 1 1 1 1 1 132.577118 660.936523 0.005885271 0.016821817 -1.5151533 0.349859381
19 2110 22760 317.509796 137.632355 308.718079 212.239929 190.992981 15300 10.526275 0.977197 0.993256 0.994713 1.495995 0.398932 1127.319092 460.029419 190.677414 332.302643 172.239624 4700 10.526275 0.91046 0.994362 0.991005 3.392447 0.814555 1 1 1 1 1 0 1 1 1 1 1 1 1 179.877441 667.289673 0.007984993 0.016983514 -1.0887723 0.470161429
20 2370 22760 386.616882 220.470581 748.738342 488.974457 187.630173 15400 15.918393 0.964028 0.991554 0.990891 0.790669 0.210845 1634.787231 504.558838 1917.632568 375.498657 174.989761 4700 15.918393 0.925447 0.900948 0.989319 4.353643 0.84261 1 1 1 1 1 0 1 1 1 1 1 1 1 166.146301 1130.228393 0.00737545 0.028765993 -1.9635613 0.256394772

Total number of rows: 5184

Table truncated, full table size 1713 Kbytes.




Supplementary data files not provided

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