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Sample GSM1014149 Query DataSets for GSM1014149
Status Public on Oct 03, 2012
Title UW_DnaseSeq_THelper-Activated_adult-8wks_C57BL/6
Sample type SRA
Source name THelper-Activated
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: THelper-Activated
cell organism: mouse
cell description: Activated primary CD4 effector cells, isolated ex vivo
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS17070,DS18848
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam lab
Growth protocol THelper-Activated_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191007
BioSample SAMN01757917
Named Annotation GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksSigRep1.bigWig
Named Annotation GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 1.7 Mb (ftp)(http) BROADPEAK
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksHotspotsRep2.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksPkRep1.narrowPeak.gz 999.1 Kb (ftp)(http) NARROWPEAK
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksPkRep2.narrowPeak.gz 1.0 Mb (ftp)(http) NARROWPEAK
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksSigRep1.bigWig 126.4 Mb (ftp)(http) BIGWIG
GSM1014149_mm9_wgEncodeUwDnaseThelpaC57bl6MAdult8wksSigRep2.bigWig 139.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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