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Sample GSM1014168 Query DataSets for GSM1014168
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Cerebrum_adult-8wks_C57BL/6
Sample type SRA
Source name Cerebrum
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Cerebrum
cell organism: mouse
cell description: Cerebrum
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labversion: 1,Hotspot-v5.1,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1,3,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191026
BioSample SAMN01757936
Named Annotation GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep1.bigWig
Named Annotation GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep2.bigWig
Named Annotation GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep3.bigWig

Supplementary file Size Download File type/resource
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 4.7 Mb (ftp)(http) BROADPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksHotspotsRep2.broadPeak.gz 5.0 Mb (ftp)(http) BROADPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksHotspotsRep3.broadPeak.gz 5.0 Mb (ftp)(http) BROADPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksPkRep1.narrowPeak.gz 2.7 Mb (ftp)(http) NARROWPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksPkRep2.narrowPeak.gz 2.3 Mb (ftp)(http) NARROWPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksPkRep3.narrowPeak.gz 2.3 Mb (ftp)(http) NARROWPEAK
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep1.bigWig 202.4 Mb (ftp)(http) BIGWIG
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep2.bigWig 160.3 Mb (ftp)(http) BIGWIG
GSM1014168_mm9_wgEncodeUwDnaseCerebrumC57bl6MAdult8wksSigRep3.bigWig 165.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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