GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1014170 Query DataSets for GSM1014170
Status Public on Oct 03, 2012
Title UW_DnaseSeq_B-cell_(CD43-)_adult-8wks_C57BL/6
Sample type SRA
Source name B-cell_(CD43-)
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: B-cell_(CD43-)
cell organism: mouse
cell description: mouse spleen B cells, CD43-,CD11b-
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS18865
labversion: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,3,2,4
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider M. Bender (FHCRC)
Growth protocol bCellCd43_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Description SRR579076, which is associated with SRX191028/GSM1014170, and SRR574026, which is associated with SRX188640/GSM1003813, are the same runs.
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191028
BioSample SAMN01757938
Named Annotation GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep1.bigWig
Named Annotation GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep2.bigWig
Named Annotation GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep3.bigWig
Named Annotation GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep4.bigWig

Supplementary file Size Download File type/resource
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 2.0 Mb (ftp)(http) BROADPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksHotspotsRep2.broadPeak.gz 1.9 Mb (ftp)(http) BROADPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksHotspotsRep3.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksHotspotsRep4.broadPeak.gz 1.9 Mb (ftp)(http) BROADPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksPkRep1.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksPkRep2.narrowPeak.gz 1001.3 Kb (ftp)(http) NARROWPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksPkRep3.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksPkRep4.narrowPeak.gz 1.0 Mb (ftp)(http) NARROWPEAK
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep1.bigWig 145.9 Mb (ftp)(http) BIGWIG
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep2.bigWig 153.0 Mb (ftp)(http) BIGWIG
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep3.bigWig 164.5 Mb (ftp)(http) BIGWIG
GSM1014170_mm9_wgEncodeUwDnaseBcellcd43nC57bl6MAdult8wksSigRep4.bigWig 152.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap