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Sample GSM1014171 Query DataSets for GSM1014171
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Patski_immortalized_Spretus.BL6-Xist
Sample type SRA
Source name Patski
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Patski
cell organism: mouse
cell description: Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.
cell sex: M
age: immortalized
age description: Immortal cells
strain: Spretus.BL6-Xist
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
age: immortalized
age description: Immortal cells
labversion: 1,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
Biomaterial provider Dr. Christine Disteche (University of Washington)
Growth protocol Patski_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191029
BioSample SAMN01757939
Named Annotation GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep1.bigWig
Named Annotation GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalHotspotsRep1.broadPeak.gz 3.1 Mb (ftp)(http) BROADPEAK
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalHotspotsRep2.broadPeak.gz 3.8 Mb (ftp)(http) BROADPEAK
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalPkRep1.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalPkRep2.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep1.bigWig 134.2 Mb (ftp)(http) BIGWIG
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep2.bigWig 147.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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