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Sample GSM1014179 Query DataSets for GSM1014179
Status Public on Oct 03, 2012
Title UW_DnaseSeq_HindlimbBud_E11.5_CD-1
Sample type SRA
Source name HindlimbBud
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HindlimbBud
cell organism: mouse
cell description: embryo hindlimb buds
cell sex: M
age: E11.5
age description: Embryonic day 11.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E11.5
age description: Embryonic day 11.5
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Selleri lab, Cornell
Growth protocol HindlimbBuds_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191037
BioSample SAMN01757947
Named Annotation GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfSigRep1.bigWig
Named Annotation GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfHotspotsRep1.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfHotspotsRep2.broadPeak.gz 5.1 Mb (ftp)(http) BROADPEAK
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfPkRep1.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfPkRep2.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfSigRep1.bigWig 164.2 Mb (ftp)(http) BIGWIG
GSM1014179_mm9_wgEncodeUwDnaseHlbudCd1ME11halfSigRep2.bigWig 206.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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