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Sample GSM1014180 Query DataSets for GSM1014180
Status Public on Oct 03, 2012
Title UW_DnaseSeq_mG/ER_adult-8wks_diffProtC_48hr_C57BL/6
Sample type SRA
Source name mG/ER
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: mG/ER
cell organism: mouse
cell description: MEL-GATA-1-ER, This is a mouse suspension cell line derived from MEL cells by stable transfection with a GATA-1-ER fusion protein construct as described by Choe et al., 2003 (Cancer Res 63, 6363-6369, 2003). These cells can be terminally differentiated into mature erythroid cells with Β-estradiol treatment
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
treatment: diffProtC_48hr
treatment description: 48 hour differentiation time point of mG/ER cells towards red blood cells after treatment with estradiol. Estradiol 10^-7 M final concentration (Stam)
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS15420,DS15415
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam Lab
Treatment protocol diffProtC_48hr
Growth protocol mG-ER_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX191038
BioSample SAMN01757948
Named Annotation GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep1.bigWig
Named Annotation GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hHotspotsRep1.broadPeak.gz 1.8 Mb (ftp)(http) BROADPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hHotspotsRep2.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hPkRep2.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep1.bigWig 113.0 Mb (ftp)(http) BIGWIG
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep2.bigWig 136.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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