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Sample GSM1014196 Query DataSets for GSM1014196
Status Public on Oct 03, 2012
Title UW_DnaseSeq_3134_immortalized_RIII
Sample type SRA
Source name 3134
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: 3134
cell organism: mouse
cell description: Mammary
cell sex: M
age: immortalized
age description: Immortal cells
strain: RIII
strain description: High mammary tumor incidence in unfostered substrains.
age: immortalized
age description: Immortal cells
labversion: 1,Hotspot-v5.1,lmax-v1.0,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: High mammary tumor incidence in unfostered substrains.
Biomaterial provider Stam lab
Growth protocol 3134_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191054
BioSample SAMN01757964
Named Annotation GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalSigRep1.bigWig
Named Annotation GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalHotspotsRep1.broadPeak.gz 1.5 Mb (ftp)(http) BROADPEAK
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalHotspotsRep2.broadPeak.gz 3.8 Mb (ftp)(http) BROADPEAK
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalPkRep1.narrowPeak.gz 907.1 Kb (ftp)(http) NARROWPEAK
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalPkRep2.narrowPeak.gz 954.9 Kb (ftp)(http) NARROWPEAK
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalSigRep1.bigWig 124.0 Mb (ftp)(http) BIGWIG
GSM1014196_mm9_wgEncodeUwDnase3134RiiiMImmortalSigRep2.bigWig 118.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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