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Sample GSM1014197 Query DataSets for GSM1014197
Status Public on Oct 03, 2012
Title UW_DnaseSeq_WholeBrain_E14.5_C57BL/6
Sample type SRA
Source name WholeBrain
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
biomaterial_type: tissue
donor_id: ENCDO088AAA
cell organism: mouse
tissue_type: Whole Brain
Sex: M
age: E14.5
age description: Embryonic day 14.5
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: E14.5
age description: Embryonic day 14.5
labversion: 1,Hotspot-v5.1,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191055
BioSample SAMN01757965
Named Annotation GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfSigRep1.bigWig
Named Annotation GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfHotspotsRep1.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfHotspotsRep2.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfPkRep1.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfPkRep2.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfSigRep1.bigWig 147.0 Mb (ftp)(http) BIGWIG
GSM1014197_mm9_wgEncodeUwDnaseWbrainC57bl6ME14halfSigRep2.bigWig 145.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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