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Sample GSM1014198 Query DataSets for GSM1014198
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Retina_adult-1wks_C57BL/6
Sample type SRA
Source name Retina
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Retina
cell organism: mouse
cell description: Retina
cell sex: M
age: adult-1wks
age description: Adult 1 week
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-1wks
age description: Adult 1 week
labexpid: DS20000
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam lab
Growth protocol Retina_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191056
BioSample SAMN01757966
Named Annotation GSM1014198_mm9_wgEncodeUwDnaseRetinaC57bl6MAdult1wksSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1014198_mm9_wgEncodeUwDnaseRetinaC57bl6MAdult1wksHotspotsRep1.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM1014198_mm9_wgEncodeUwDnaseRetinaC57bl6MAdult1wksPkRep1.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014198_mm9_wgEncodeUwDnaseRetinaC57bl6MAdult1wksSigRep1.bigWig 151.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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