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Sample GSM1024853 Query DataSets for GSM1024853
Status Public on Mar 08, 2013
Title WT-XY-1
Sample type RNA
 
Source name E18.5 Tex19.1+/+ XY placenta
Organism Mus musculus
Characteristics tissue: placenta
strain: C57BL/6
developmental stage: E18.5
gender: male
genotype/variation: Tex19.1+/+
Treatment protocol None
Growth protocol Freshly dissected material
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol (Invitrogen), and then treated with DNase I. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA was prepared using the Illumina TotalPrep RNA Amplification Kit (Ambion).
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 2.2
Data processing Background subtracted (method=bgAdjust), log-transformed (method=”log2”), quantile-normalized (method=”quantile”) using lumi in R.
 
Submission date Oct 24, 2012
Last update date Mar 08, 2013
Contact name Ian Adams
Organization name MRC Human Genetics Unit
Department Genome Regulation
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH42XU
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE41823 Gene expression in E18.5 Tex19.1-/- mouse placenta

Data table header descriptions
ID_REF
VALUE Lumi-computed background-subtracted, quantile-normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 3.435552519 0.5470086
ILMN_1212603 3.694335106 0.3311966
ILMN_1212605 6.52289964 0.001068376
ILMN_1212607 3.408436776 0.5790598
ILMN_1212612 3.163877082 0.7767094
ILMN_1212614 2.55171506 0.9839743
ILMN_1212619 4.36408831 0.04273504
ILMN_1212623 3.563857324 0.4326923
ILMN_1212625 8.203251742 0
ILMN_1212626 8.187740651 0
ILMN_1212628 3.817411111 0.2350427
ILMN_1212632 5.644837817 0.002136752
ILMN_1212633 5.1137545 0.002136752
ILMN_1212636 9.7273502 0
ILMN_1212637 8.607893124 0
ILMN_1212638 10.96581128 0
ILMN_1212639 5.116998468 0.002136752
ILMN_1212644 3.064371657 0.8386752
ILMN_1212645 5.04750321 0.004273504
ILMN_1212646 9.421146127 0

Total number of rows: 45281

Table truncated, full table size 1490 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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