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Sample GSM1040903 Query DataSets for GSM1040903
Status Public on Apr 21, 2015
Title NFH-46, replicate 1
Sample type RNA
 
Source name derma
Organism Homo sapiens
Characteristics cell line: NFH46
age: 81 year old woman, passage 4
tissue: dermal fibroblasts
Extracted molecule total RNA
Extraction protocol The RNA was isolated using RNeasy Mini Kit (Quiagen), and DNase digestion (RNase-free DNase Set, Quiagen) has been applied on the columns during isolation.
Label biotin
Label protocol Illumina Gene Expression protocols contain a first- and second-strand reverse transcription step, followed by a single in vitro transcription (IVT) amplification that incorporates biotin-labeled nucleotides. Subsequent steps include array hybridization, washing, blocking, and streptavadin-Cy3 staining. Fluorescence emission by Cy3 is quantitatively detected for downstream analysis.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Illumina BeadStudio software version 3
 
Submission date Nov 26, 2012
Last update date Apr 21, 2015
Contact name Alessandro Prigione
E-mail(s) alessandro.prigione@mdc-berlin.de
Organization name Max Delbrueck Center for Molecular Medicine
Lab Department of Neuroproteomics
Street address Robert-Roessle-Str. 10
City Berlin
State/province Berlin
ZIP/Postal code D-13125
Country Germany
 
Platform ID GPL6883
Series (1)
GSE42492 Induced pluripotent stem cell-derived neurons from a sporadic Alzheimer disease donor as a model for investigating disease mechanisms

Data table header descriptions
ID_REF
VALUE Rank invariant normalized signal

Data table
ID_REF VALUE
ILMN_1802380 1637.456
ILMN_1792389 25.62251
ILMN_2375156 113.4574
ILMN_1697642 2474.04
ILMN_1681845 2547.414
ILMN_1690979 7.962807
ILMN_1811114 -21.02328
ILMN_1660729 -19.90257
ILMN_2129572 1136.815
ILMN_1705659 -15.85833
ILMN_1797055 206.5882
ILMN_1670547 -22.68002
ILMN_2342515 162.5363
ILMN_1800425 3388.231
ILMN_1783852 83.77952
ILMN_1721344 569.0145
ILMN_1679973 0.5791558
ILMN_1701854 823.9183
ILMN_1678707 8364.617
ILMN_2276504 48.90224

Total number of rows: 24526

Table truncated, full table size 528 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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