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Sample GSM10428

Query DataSets for GSM10428

Status

Public on Nov 08, 2003

Title

Kidney cortical collecting duct

Sample type

SAGE

Anchor

Sau3A

Tag Count

53779

Tag Length

Source name

microdissected cortical collecting ducts

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Library generated from microdissected kidney cortical collecting ducts obtained from the healthy pole of cancerous kidneys. Donors were from either sex. The library was generated using Sau3A I as anchoring enzyme. Data are provided after removal of linker derived sequences.
Keywords = microdissection
Keywords = nephron
Keywords = SADE

Submission date

Sep 24, 2003

Last update date

Nov 19, 2008

Contact name

Jean-Marc Elalouf

E-mail(s)

jean-marc.elalouf@cea.fr

Phone

(33) 1 69088022

Fax

(33) 1 69084712

Organization name

CEA Saclay

Department

IBITEC-S

Lab

Laboratoire de PhysioGénomique

Street address

City

91191 Gif/ Yvette Cedex

ZIP/Postal code

91191

Country

France

Platform ID

GPL6

Series (1)

GSE694

SADE analysis of microdissected kidney

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
TGCTGCAGTG	477	8869.63
GCCGTTCTGG	394	7326.28
GGCGCACTGC	329	6117.63
CGGGATGGGA	304	5652.76
GCGCCACTGC	264	4908.98
GCCTAGTATG	260	4834.60
ACACATCAAG	251	4667.25
CCTCCCTTAC	233	4332.55
AAATATCACT	227	4220.98
GGGGCAAGAG	222	4128.01
AGCAAGCAGG	221	4109.41
GCACCACTGC	212	3942.06
TGAGTTCAGA	206	3830.49
TAGAAATTGC	205	3811.90
AGGAGGCTTC	205	3811.90
AACCTCACCA	196	3644.55
GTGCCACTGC	187	3477.19
TCTTATACTA	182	3384.22
AGACTCTGAA	176	3272.65
ACACACACCA	169	3142.49

Total number of rows: 22657

Table truncated, full table size 422 Kbytes.

Supplementary data files not provided