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Sample GSM10429

Query DataSets for GSM10429

Status

Public on Nov 08, 2003

Title

Kidney outer medullary collecting duct.

Sample type

SAGE

Anchor

Sau3A

Tag Count

67476

Tag Length

Source name

microdissected outer medullary collecting ducts

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Library generated from microdissected outer medullary collecting ducts obtained from the healthy pole of cancerous kidneys. Donors were from either sex. The library was generated using Sau3A I as anchoring enzyme. Data are provided after removal of linker derived sequences.
Keywords = microdissection
Keywords = nephron
Keywords = SADE

Submission date

Sep 24, 2003

Last update date

Nov 19, 2008

Contact name

Jean-Marc Elalouf

E-mail(s)

jean-marc.elalouf@cea.fr

Phone

(33) 1 69088022

Fax

(33) 1 69084712

Organization name

CEA Saclay

Department

IBITEC-S

Lab

Laboratoire de PhysioGénomique

Street address

City

91191 Gif/ Yvette Cedex

ZIP/Postal code

91191

Country

France

Platform ID

GPL6

Series (1)

GSE694

SADE analysis of microdissected kidney

Data table header descriptions
TAG	Tag sequence
COUNT	Tag abundance
TPM	tags per million

Data table
TAG	COUNT	TPM
TGCTGCAGTG	572	8477.09
GCGCCACTGC	472	6995.08
AGGAGGCTTC	470	6965.44
GCCGTTCTGG	435	6446.74
GCACCACTGC	371	5498.25
TCTTATACTA	368	5453.79
AGCAAGCAGG	356	5275.95
TACAATGAAG	340	5038.83
TGTGCAGGGT	331	4905.45
TAGAAATTGC	319	4727.61
GCCTAGTATG	303	4490.49
TGAGTTCAGA	292	4327.46
CGGGATGGGA	291	4312.64
AAATATCACT	276	4090.34
GGCGCACTGC	267	3956.96
CCTCCCTTAC	258	3823.58
GTGCCACTGC	254	3764.30
AACCTCACCA	244	3616.10
AGACTCTGAA	234	3467.90
ACCTGAGGTC	231	3423.44

Total number of rows: 26071

Table truncated, full table size 485 Kbytes.

Supplementary data files not provided