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Sample GSM1052713 Query DataSets for GSM1052713
Status Public on Jan 10, 2013
Title meningiomas_176
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: benign
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R04C01
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.33639951
cg00000108 0.695673572
cg00000109 0.90757749
cg00000165 0.173023983
cg00000236 0.937358802
cg00000289 0.732640793
cg00000292 0.696201818
cg00000321 0.340595293
cg00000363 0.303426033
cg00000622 0.014076326
cg00000658 0.938286009
cg00000714 0.196135517
cg00000721 0.970888764
cg00000734 0.095945751
cg00000769 0.021044092
cg00000807 0.918895938
cg00000884 0.958202664
cg00000905 0.101422939
cg00000924 0.652413265
cg00000948 0.954710818

Total number of rows: 485577

Table truncated, full table size 10827 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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