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Sample GSM1052714 Query DataSets for GSM1052714
Status Public on Jan 10, 2013
Title meningiomas_238
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Female
tissue type: meningiomas
subtype: benign
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R05C01
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.61437956
cg00000108 0.901014152
cg00000109 0.9186128
cg00000165 0.209033345
cg00000236 0.867253303
cg00000289 0.797265228
cg00000292 0.50851956
cg00000321 0.6909799
cg00000363 0.253121327
cg00000622 0.015231314
cg00000658 0.923773846
cg00000714 0.134513825
cg00000721 0.962014697
cg00000734 0.096635081
cg00000769 0.022338871
cg00000807 0.897555613
cg00000884 0.960315467
cg00000905 0.101345426
cg00000924 0.693601338
cg00000948 0.955458128

Total number of rows: 485577

Table truncated, full table size 10806 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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