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Sample GSM1052715 Query DataSets for GSM1052715
Status Public on Jan 10, 2013
Title meningiomas_249
Sample type genomic
 
Source name genomic DNA from meningiomas
Organism Homo sapiens
Characteristics gender: Male
tissue type: meningiomas
subtype: malignant
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from meningiomas tissues using Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description array identifier: 6929671070_R06C01
Data processing BeadStudio software v3.2
 
Submission date Dec 12, 2012
Last update date Jun 14, 2021
Contact name Fan Gao
E-mail(s) gaofan83@hotmail.com
Organization name USC
Department ZNI
Street address 1501 San Pablo St. ZNI 245
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE42882 DNA methylation in the malignant transformation of meningiomas
Relations
Reanalyzed by GSE178139

Data table header descriptions
ID_REF
VALUE Average Beta (background subtracted)

Data table
ID_REF VALUE
cg00000029 0.165604368
cg00000108 0.973497792
cg00000109 0.883148977
cg00000165 0.938316549
cg00000236 0.900594986
cg00000289 0.550941002
cg00000292 0.391367255
cg00000321 0.774621214
cg00000363 0.21170448
cg00000622 0.010966749
cg00000658 0.916917076
cg00000714 0.132626791
cg00000721 0.965789014
cg00000734 0.093227559
cg00000769 0.019671369
cg00000807 0.824520036
cg00000884 0.952799777
cg00000905 0.107658465
cg00000924 0.642413294
cg00000948 0.948900105

Total number of rows: 485577

Table truncated, full table size 10844 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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