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Sample GSM1053603 Query DataSets for GSM1053603
Status Public on Aug 15, 2013
Title mosaic larval eye-antennal discs NotchACT bskDN overexpressing scrib mutant A
Sample type RNA
 
Source name NotchICD bskDN (dominant negative) expressingscrib mutant Drosophila larval mosaic eye-antennal discs
Organism Drosophila melanogaster
Characteristics tissue: larval mosaic eye-antennal discs
genotype: NotchICD bskDN (dominant negative) expressing scrib mutant
developmental stage: 3rd instar larvae
genetic background: w1118
Treatment protocol eye-annennal disc were dissected from 3rd instar larvae at day 5 after egg deposition.
Growth protocol Larvae were incubated at 25oC and grown on standard fly media
Extracted molecule total RNA
Extraction protocol Samples were prepared in triplicate, and the RNA isolated using TRIZOL, before being column purified (Qiagen).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA.
 
Hybridization protocol Hybridization was carried out following standard Affymetrix protocols
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 following Affymetrix protocols.
Description tumours
Data processing The data was gcrma normalised using the R Bioconductor package gcrma.
 
Submission date Dec 14, 2012
Last update date Aug 15, 2013
Contact name Helena Elizabeth Richardson
E-mail(s) helena.richardson@petermac.org
Phone 61396561466
Organization name Peter MacCallum Cancer Center
Department Research Division
Lab Cell Cycle and Development lab
Street address 7 St Andrew's place
City East Melbourne
State/province Victoria
ZIP/Postal code 3002
Country Australia
 
Platform ID GPL1322
Series (1)
GSE42938 Abrupt scrib- vs. Abrupt and RasV12 (RasACT) scrib-, NotchICD (NACT) scrib- +/- JNK (Bsk) expression profiles

Data table header descriptions
ID_REF
VALUE Log base 2 gcrma normalised expression value

Data table
ID_REF VALUE
1616608_a_at 9.520924667
1622892_s_at 8.474639279
1622893_at 2.174348133
1622894_at 2.174348133
1622895_at 9.629419941
1622896_at 7.127010461
1622897_at 2.174348133
1622898_a_at 11.23277339
1622899_at 4.374658765
1622900_at 2.174348133
1622901_at 2.389004902
1622902_at 2.174348133
1622903_s_at 8.801833852
1622904_at 2.174348133
1622905_at 2.176661943
1622906_at 10.06144622
1622907_at 7.300000603
1622908_a_at 2.401537634
1622909_at 9.931813568
1622910_at 2.174348133

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.




Supplementary file Size Download File type/resource
GSM1053603_NACTscribBskDNA.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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