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Sample GSM1059670 Query DataSets for GSM1059670
Status Public on Dec 31, 2017
Title Ovarian_PrimarySurgery_LD29
Sample type genomic
 
Source name Epithelia ovarian cancer
Organism Homo sapiens
Characteristics age: 53
survival status: alive
survivaltime_month: 14.1
tissue: malignant ovarian tumor
Stage: stage 4
grading: G2
subtype: serous
Treatment protocol Primary surgery
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from tumor tissue and scarpping cells using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description LD29
Data processing BeadStudio software v3.2. The sample data table contains Average Beta and the non_normalized.txt file contains Unmethylated and methylated signal intensities.
 
Submission date Jan 03, 2013
Last update date Dec 31, 2017
Contact name Hung-Cheng Lai
E-mail(s) hclai30656@gmail.com
Organization name Taipei Medical University
Department Department of Obstetrics and Gynecology, School of Medicine, College of Medicine,
Street address No.250, Wuxing St.
City Taipei
ZIP/Postal code 11031
Country Taiwan
 
Platform ID GPL8490
Series (1)
GSE43265 An epigenetic panel of NEFH and HS3ST2 relates to overall survival in human ovarian cancer .

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000292 0.6815021 3.68E-38
cg00002426 0.01431981 4.27E-11
cg00003994 0 0.9088779
cg00005847 0.7246253 3.68E-38
cg00006414 0.06964421 3.68E-38
cg00007981 0.01170446 3.68E-38
cg00008493 0.9824055 3.68E-38
cg00008713 0.01792691 3.68E-38
cg00009407 0.0153164 3.68E-38
cg00010193 0.5567715 3.68E-38
cg00011459 0.3150685 0.3282951
cg00012199 0.01405905 3.68E-38
cg00012386 0.007636711 3.68E-38
cg00012792 0.007402838 3.68E-38
cg00013618 0.7772632 3.68E-38
cg00014085 0.01173236 3.68E-38
cg00014837 0.5652174 1.06E-08
cg00015770 0.04115226 3.68E-38
cg00016968 0.2964963 3.68E-38
cg00019495 0.03856749 6.78E-07

Total number of rows: 27578

Table truncated, full table size 811 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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