|
| Status |
Public on Dec 31, 2017 |
| Title |
Ovarian_PrimarySurgery_LD100 |
| Sample type |
genomic |
| |
|
| Source name |
Epithelia ovarian cancer
|
| Organism |
Homo sapiens |
| Characteristics |
age: 59
survival status: alive
survivaltime_month: 11.6
tissue: malignant ovarian tumor
Stage: stage 3
grading: G2
subtype: serous
|
| Treatment protocol |
Primary surgery
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from tumor tissue and scarpping cells using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
LD100
|
| Data processing |
BeadStudio software v3.2. The sample data table contains Average Beta and the non_normalized.txt file contains Unmethylated and methylated signal intensities.
|
| |
|
| Submission date |
Jan 03, 2013 |
| Last update date |
Dec 31, 2017 |
| Contact name |
Hung-Cheng Lai |
| E-mail(s) |
hclai30656@gmail.com
|
| Organization name |
Taipei Medical University
|
| Department |
Department of Obstetrics and Gynecology, School of Medicine, College of Medicine,
|
| Street address |
No.250, Wuxing St.
|
| City |
Taipei |
| ZIP/Postal code |
11031 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE43265 |
An epigenetic panel of NEFH and HS3ST2 relates to overall survival in human ovarian cancer . |
|
