|
| Status |
Public on Aug 11, 2006 |
| Title |
Yeast FAIRE_BY4741 #1_Oligo Array Rando1 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
genomic unfixed BY4741
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
genomic unfixed BY4741
|
| Extracted molecule |
genomic DNA |
| Label |
Cy3
|
| Label protocol |
samples and references were amplified using a random primed PCR-based method (see Bohlander et al., 1992)
|
| |
|
| Channel 2 |
| Source name |
fixed BY4741 #1
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
fixed BY4741 #1
|
| Extracted molecule |
genomic DNA |
| Label |
Cy5
|
| Label protocol |
samples and references were amplified using a random primed PCR-based method (see Bohlander et al., 1992)
|
| |
|
| |
| Scan protocol |
Images were acquired using a GenePix 4000B scanner and Genepix software (Axon Instruments)
|
| Description |
FAIRE_BY4741 #1_Oligo Array Rando1
|
| Data processing |
The median of ratios data were obtained from Genepix GPR file. The log2 ratios were calculated from these data then block normalized to control for geographic variation across each array. Dye swap experiments were inverted.
|
| |
|
| Submission date |
Apr 25, 2006 |
| Last update date |
Nov 27, 2006 |
| Contact name |
Jason D Lieb |
| E-mail(s) |
jlieb@bio.unc.edu
|
| Phone |
919-842-3228
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Biology
|
| Lab |
Jason Lieb
|
| Street address |
203 Fordham Hall
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-3280 |
| Country |
USA |
| |
|
| Platform ID |
GPL3703 |
| Series (2) |
| GSE4721 |
Yeast FAIRE_BY4741 on Oligo Arrays |
| GSE4736 |
Yeast FAIRE Study_Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. |
|
