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Sample GSM1079 Query DataSets for GSM1079
Status Public on Feb 12, 2002
Title cdc15 270 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 270 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n30
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 540 488 12102 307 19 293 288 331 22 353 0 0 -9.103 .002 36 4 636.947 550.091 .002 .002 0 1456 25 54 61 80 87 -9.103
2 547 488 12222 309 21 294 288 331 24 355 0 0 -8.992 .011 64 4 582 509.25 .002 .002 0 1391 25 53 60 88 95 -8.992
3 552 488 4523 309 29 295 280 322 33 355 .47 0 -7.099 .028 60 8 155.966 137.061 .006 .007 .003 1316 25 53 60 97 104 -7.099
4 497 488 47 306 26 297 280 322 30 352 .575 0 -.648 .931 4 4 1.808 1.567 .553 .638 .315 1316 25 53 60 106 113 -.648
5 499 496 247 390 110 298 280 322 126 448 .836 0 -.971 .396 20 16 2.245 1.96 .445 .51 .429 1316 25 53 60 115 122 -.971
6 499 496 8 313 33 297 280 322 38 360 .404 0 2.248 .833 0 4 .242 .211 4.125 4.75 .453 1316 25 53 60 124 131 2.248
7 498 488 216 444 164 299 280 322 188 510 .861 0 -.2 .92 20 24 1.317 1.149 .759 .87 .763 1316 25 53 60 133 140 -.2
8 495 488 27 303 23 297 280 322 26 348 .804 0 -.054 1 0 8 1.174 1.038 .852 .963 .666 1316 25 53 60 142 149 -.054
9 491 488 18 304 24 297 280 322 27 349 .068 0 .585 .571 0 4 .75 .667 1.333 1.5 .076 1316 25 53 60 151 158 .585
10 489 488 52 354 74 296 280 322 85 407 .784 0 .709 1.2 4 16 .703 .612 1.423 1.635 1.071 1321 25 52 59 160 167 .709
11 487 480 28 376 88 297 288 331 101 432 .703 0 1.851 4 4 8 .318 .277 3.143 3.607 2.268 1316 25 52 59 169 176 1.851
12 485 480 20 342 54 297 288 331 62 393 .627 0 1.632 1.286 0 20 .37 .323 2.7 3.1 1.016 1316 25 52 59 178 185 1.632
13 484 480 602 858 570 298 288 331 655 986 .946 0 .122 .91 36 36 1.056 .919 .947 1.088 .997 1316 25 52 59 187 194 .122
14 493 480 10 338 50 312 288 331 58 389 .85 0 2.536 1.5 4 8 .2 .172 5 5.8 1.031 1316 25 52 59 196 203 2.536
15 493 480 15 312 24 313 288 331 28 359 .272 0 .9 1.154 0 8 .625 .536 1.6 1.867 .392 1316 25 52 59 205 212 .9
16 492 480 40 368 80 312 288 331 92 423 .678 0 1.202 .989 4 8 .5 .435 2 2.3 1.002 1316 25 52 59 214 221 1.202
17 492 480 31 329 41 310 288 331 47 378 .849 0 .6 .955 4 12 .756 .66 1.323 1.516 .917 1316 25 52 59 223 230 .6
18 492 480 19 339 51 308 288 331 59 390 .699 0 1.635 1.571 0 12 .373 .322 2.684 3.105 1.312 1321 25 51 58 232 239 1.635
19 480 480 45 368 88 293 280 322 101 423 .84 0 1.166 1 4 16 .511 .446 1.956 2.244 1.986 1316 25 51 58 241 248 1.166
20 483 480 40 334 54 292 280 322 62 384 .634 0 .632 .333 4 8 .741 .645 1.35 1.55 1.151 1316 25 51 58 250 257 .632

Total number of rows: 8832

Table truncated, full table size 1016 Kbytes.




Supplementary data files not provided

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