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Sample GSM1086 Query DataSets for GSM1086
Status Public on Feb 12, 2002
Title cdc15 100 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 100 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n107
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 356 336 8979 537 46 554 491 578 54 632 -.017 0 -7.377 .018 37 11 195.196 166.278 .005 .006 -.002 1286 45 33 41 61 69 -7.377
2 359 344 7745 532 41 561 491 578 48 626 9.438 0 -7.334 .015 44 4 188.902 161.354 .005 .006 .771 1189 45 32 40 69 77 -7.334
3 346 344 2502 514 23 509 491 578 27 605 .839 0 -6.534 .092 26 8 108.783 92.667 .009 .011 .018 1059 45 32 40 78 86 -6.534
4 342 336 15 535 44 507 491 578 51 629 .126 0 1.766 3.938 2 6 .341 .294 2.933 3.4 .361 1064 45 32 40 87 95 1.766
5 340 336 82 648 157 497 491 578 184 762 .93 0 1.166 1.917 13 15 .522 .446 1.915 2.244 2.019 1064 45 32 40 96 104 1.166
6 338 336 13 520 29 491 491 578 34 612 .436 0 1.387 2.103 2 8 .448 .382 2.231 2.615 .886 1064 45 32 40 105 113 1.387
7 339 336 222 1184 693 491 491 578 815 1393 .905 0 1.876 2.308 22 20 .32 .272 3.122 3.671 3.545 1064 45 32 40 114 122 1.876
8 339 336 22 516 36 490 480 565 42 607 .626 0 .933 1.276 6 8 .611 .524 1.636 1.909 .973 1064 45 32 40 123 131 .933
9 339 336 10 524 44 489 480 565 51 616 .454 0 2.35 1.425 2 6 .227 .196 4.4 5.1 1.56 1064 45 32 40 132 140 2.35
10 340 336 10 528 48 483 480 565 56 621 .533 0 2.485 1.736 2 6 .208 .179 4.8 5.6 1.33 1064 45 32 40 141 149 2.485
11 341 336 21 514 34 483 480 565 40 605 .546 0 .93 1.7 2 6 .618 .525 1.619 1.905 .943 1064 45 32 40 150 158 .93
12 346 344 490 10 482 480 565 11 576 .035 0 2.813 0 2 .104 1064 45 32 40 159 167
13 349 344 566 2726 2246 483 480 565 2642 3207 .921 0 2.223 2.447 26 24 .252 .214 3.968 4.668 3.802 1064 45 32 40 168 176 2.223
14 359 344 24 536 56 514 480 565 66 631 .857 0 1.459 1.407 6 11 .429 .364 2.333 2.75 1.286 1060 45 32 40 177 185 1.459
15 357 344 15 510 30 514 480 565 35 600 .828 0 1.222 .957 2 4 .5 .429 2 2.333 .905 1055 45 32 40 186 194 1.222
16 356 344 487 7 513 480 565 8 573 -.083 0 1.375 0 2 -.23 1078 45 31 39 195 203
17 356 344 475 512 480 565 559 .155 0 2.844 0 0 .306 1071 45 31 39 204 212
18 355 344 9 496 16 509 480 565 19 584 .289 0 1.078 3.563 2 0 .563 .474 1.778 2.111 .425 1064 45 31 39 213 221 1.078
19 350 344 1 499 31 477 468 551 36 587 .322 0 5.17 4.25 0 4 .032 .028 31 36 1.23 1064 45 31 39 222 230 5.17
20 352 344 51 496 28 477 468 551 33 584 .755 0 -.628 .958 6 4 1.821 1.545 .549 .647 .391 1064 45 31 39 231 239 -.628

Total number of rows: 8832

Table truncated, full table size 1017 Kbytes.




Supplementary data files not provided

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