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Sample GSM1095 Query DataSets for GSM1095
Status Public on Feb 12, 2002
Title cdc15 160 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 160 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n110
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 453 424 9330 671 169 514 502 474 159 633 4.795 0 -5.875 .026 28 20 55.207 58.679 .018 .017 .232 1281 45 22 30 67 75 -5.875
2 450 424 8973 721 230 499 491 463 217 680 15.05 0 -5.37 .125 44 28 39.013 41.35 .026 .024 2.855 1156 45 22 30 75 83 -5.37
3 440 424 3345 774 283 494 491 463 267 730 .96 0 -3.647 .106 33 13 11.82 12.528 .085 .08 .088 1026 45 22 30 84 92 -3.647
4 428 424 148 732 241 493 491 463 228 691 .959 0 .623 1.188 15 15 .614 .649 1.628 1.541 1.998 1036 45 22 30 93 101 .623
5 426 424 228 990 499 495 491 463 471 934 .977 0 1.047 1.582 22 20 .457 .484 2.189 2.066 2.527 1046 45 22 30 102 110 1.047
6 429 424 116 718 227 505 491 463 214 677 .975 0 .883 1.942 15 33 .511 .542 1.957 1.845 2.067 1056 45 22 30 111 119 .883
7 426 424 302 919 428 506 491 463 404 867 .989 0 .42 1.568 17 22 .706 .748 1.417 1.338 1.518 1061 45 22 30 120 128 .42
8 428 416 131 760 269 507 491 463 254 717 .942 0 .955 2.375 20 20 .487 .516 2.053 1.939 2.094 1061 45 22 30 129 137 .955
9 426 416 194 836 356 500 480 453 336 789 .973 0 .792 1.761 22 22 .545 .577 1.835 1.732 1.67 1061 45 22 30 138 146 .792
10 422 408 12 515 47 483 468 442 44 486 .694 0 1.874 2.125 4 4 .255 .273 3.917 3.667 1.25 1061 45 22 30 147 155 1.874
11 424 408 36 542 74 480 468 442 69 511 .897 0 .939 1.5 8 11 .486 .522 2.056 1.917 2.005 1061 45 22 30 156 164 .939
12 421 408 155 794 337 471 457 431 318 749 .979 0 1.037 2.087 20 24 .46 .487 2.174 2.052 2.008 1061 45 22 30 165 173 1.037
13 416 408 498 1490 1033 462 457 431 975 1406 .977 0 .969 1.708 24 26 .482 .511 2.074 1.958 1.967 1061 45 22 30 174 182 .969
14 410 408 82 656 199 459 457 431 188 619 .992 0 1.197 2.275 11 15 .412 .436 2.427 2.293 1.983 1061 45 22 30 183 191 1.197
15 407 400 88 635 178 456 457 431 168 599 .964 0 .933 1.958 11 13 .494 .524 2.023 1.909 1.922 1061 45 22 30 192 200 .933
16 406 400 101 660 215 454 445 420 203 623 .951 0 1.007 2.857 13 13 .47 .498 2.129 2.01 1.683 1061 45 22 30 201 209 1.007
17 406 400 107 672 227 450 445 420 214 634 .976 0 1 2.08 11 15 .471 .5 2.121 2 1.802 1061 45 22 30 210 218 1
18 405 400 43 548 103 449 445 420 97 517 .903 0 1.174 1.839 4 8 .417 .443 2.395 2.256 2.057 1061 45 22 30 219 227 1.174
19 406 400 72 585 140 453 445 420 132 552 .96 0 .874 2.661 11 13 .514 .545 1.944 1.833 1.723 1061 45 22 30 228 236 .874
20 408 400 206 864 419 462 445 420 395 815 .983 0 .939 1.918 24 26 .492 .522 2.034 1.917 2.053 1061 45 22 30 237 245 .939

Total number of rows: 8832

Table truncated, full table size 1026 Kbytes.




Supplementary data files not provided

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