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Sample GSM109575 Query DataSets for GSM109575
Status Public on Jun 08, 2006
Title cplxpro2 - vit
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO2 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: late-vitellogenesis
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbk0048.l.08 0.3464 121.354 84.4989 0.00374097 85.6158 120.769 219.697 0 0.918167 0
tcbk0023.n.15 0.6890 123.167 105.814 0.00538511 105.225 124.788 253.129 0 0.914569 0
tcbi0010.o.09 1.1988 308.017 364.41 0.00179693 362.783 307.375 319.998 1 0.917492 0
tcba0006.c.15 1.5822 306.027 326.469 0.00279851 326.184 304.196 292.796 1 0.922496 0
tcay0024.j.14 1.4171 266.28 267.173 0.00429973 266.28 267.173 270.863 1 0.94318 0
tcay0002.m.19 1.4456 367.904 213.227 0.0104861 220.527 370.281 193.621 0 0.927278 0
tcac0006.k.10 7.5799 1707.55 1443.77 -0.00157915 1457.93 1709.86 249.993 1 0.96833 0
1RT152N02_D_G01 3.1139 620.321 619.167 0.00454505 620.321 619.167 279.782 1 0.937047 0
1RT118G08_C_D04 1.9161 349.272 348.899 0.00293138 349.272 348.899 270.588 1 0.958259 0
1RT85F03_B_C02 2.2548 150.726 118.398 0.00418458 118.496 152.152 227.247 0 0.922018 0
1RT55O11_A_H06 1.7621 284.39 226.335 0.00487847 232.695 282.791 244.494 1 0.916507 0
CVU03687 13.1503 574.831 649.004 0.0005476 649.397 575.3 310.95 1 0.913303 0
tcbk0048.l.15 0.3372 105.061 98.7114 0.00445075 96.8254 106.693 263.805 0 0.897289 0
tcbk0023.o.12 3.0800 514.056 513.245 0.000969666 514.056 513.245 274.878 1 0.901446 0
tcbi0010.o.16 0.4253 112.893 137.032 0.00227369 169.327 95.5286 344.465 0 0.875717 0
tcba0006.d.08 0.6203 126.457 198.789 0.00227369 186.853 142.397 344.465 0 0.899107 0
tcay0024.k.20 1.7448 359.842 342.469 0.00300232 342.954 359.984 256.57 1 0.964112 0
tcay0002.n.01 0.7412 107.356 112.856 0.00227369 168.937 78.0925 344.465 0 0.821091 0
tcac0006.k.23 1.1921 267.557 157.179 0.00901788 158.713 268.897 203.881 0 0.923917 0
1RT152O08_C_H04 1.6779 196.263 85.8681 0.00857317 89.154 199.596 173.564 0 0.926092 0

Total number of rows: 9216

Table truncated, full table size 759 Kbytes.




Supplementary data files not provided
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