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Sample GSM109577 Query DataSets for GSM109577
Status Public on Jun 08, 2006
Title cplxpro3 - vit
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO3 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: late-vitellogenesis
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbk0048.l.08 0.2059 151.357 112.339 0.00282712 113.297 150.928 213.034 1 0.928912 0
tcbk0023.n.15 0.6285 243.248 140.757 0.00748227 143.738 247.346 188.641 1 0.928158 0
tcbi0010.o.09 0.9977 618.433 695.792 0.000687618 694.022 616.5 311.299 1 0.919401 0
tcba0006.c.15 1.1106 502.717 475.952 0.00452993 478.415 500.831 260.79 1 0.958156 0
tcay0024.j.14 1.6283 705.744 638.155 0.00411401 641.345 706.293 253.078 1 0.943523 0
tcay0002.m.19 1.3617 826.013 581.578 0.0174757 599.685 827.44 211.8 1 0.946 0.0974008
tcac0006.k.10 6.4967 3525.67 3390.43 -0.0164417 3394.07 3530.39 264.018 1 0.971124 0
1RT152N02_D_G01 2.5450 1176.98 973.161 0.00918827 979.344 1181.8 247.567 1 0.905825 0.0974008
1RT118G08_C_D04 2.1657 925.92 845.758 -0.000190373 850.413 927.373 254.915 1 0.966363 0
1RT85F03_B_C02 2.1713 342.963 279.468 0.00526142 280.527 345.178 233.167 1 0.938718 0
1RT55O11_A_H06 1.6458 645.617 536.392 0.00351622 542.337 644.4 240.83 1 0.964262 0
CVU03687 2.7150 327.634 310.876 0.00328838 311.03 327.413 261.393 1 0.950934 0
tcbk0048.l.15 0.2153 149.617 181.283 0.00197233 225.888 133.041 345.028 0 0.886179 0
tcbk0023.o.12 3.2944 1310.18 1306.8 -0.00241879 1310.18 1306.8 271.729 1 0.954375 0
tcbi0010.o.16 0.3099 188.045 335.172 0.00197233 281.619 240.418 345.028 0 0.872832 0
tcba0006.d.08 0.4817 216.452 271.957 0.00197233 322.164 200.168 345.028 0 0.91122 0.0953212
tcay0024.k.20 1.6363 754.292 631.63 0.00338418 639.351 755.757 239.092 1 0.948849 0
tcay0002.n.01 0.4635 156.405 167.844 0.00197233 243.429 121.192 345.028 0 0.847496 0
tcac0006.k.23 1.0792 602.234 481.47 0.0131714 484.315 606.301 227.015 1 0.937015 0.0974008
1RT152O08_C_H04 1.3445 358.25 135.064 0.0149615 137.419 367.529 151.589 0 0.934373 0.03285

Total number of rows: 9216

Table truncated, full table size 770 Kbytes.




Supplementary data files not provided
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