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Sample GSM109581 Query DataSets for GSM109581
Status Public on Jun 08, 2006
Title cplxpro29 - mat
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO29 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: oocyte maturation
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbk0048.l.08 0.3204 61.7205 44.451 0.00144983 45.661 61.4318 222.68 0 0.871571 0
tcbk0023.n.15 0.7035 56.8051 13.8389 0.00269983 13.7386 56.6999 136.515 0 0.877314 0
tcbi0010.o.09 1.0823 139.07 147.746 0.00110402 147.839 137.837 293.35 1 0.919442 0
tcba0006.c.15 1.5471 163.851 135.032 0.00147539 135.767 164.376 244.951 1 0.927358 0
tcay0024.j.14 1.6068 168.628 150.575 0.00153289 152.482 167.603 253.866 1 0.919497 0
tcay0002.m.19 1.5473 230.828 217.444 0.00350959 218.572 229.97 261.064 1 0.919721 0
tcac0006.k.10 6.3751 832.225 704.714 -0.000510645 709.999 832.242 243.705 1 0.955142 0
1RT152N02_D_G01 3.6437 408.881 418.094 0.000871309 417.835 409.168 284.054 1 0.892299 0
1RT118G08_C_D04 2.3070 224.019 224.557 0.00100691 224.019 224.557 278.477 1 0.947983 0
1RT85F03_B_C02 2.3671 90.636 63.6523 0.00216334 64.6293 91.5094 206.924 0 0.908278 0
1RT55O11_A_H06 1.0220 92.3127 73.6618 0.00200766 73.9798 93.0101 235.179 0 0.883963 0
CVU03687 0 223.813 212.002 0.000969495 214.803 222.231 260.35 1 0.888752 0
tcbk0048.l.15 0.2989 54.1408 19.1322 0.00250977 19.705 55.9619 151.931 0 0.859081 0
tcbk0023.o.12 3.2578 306.908 293.754 -0.000107381 293.9 306.69 258.655 1 0.949034 0
tcbi0010.o.16 0.3803 60.9441 56.6918 0.00154073 88.7841 38.6037 345.282 0 0.755649 0
tcba0006.d.08 0.7190 84.1662 74.3374 0.00154073 120.409 52.816 345.282 0 0.753294 0
tcay0024.k.20 1.9351 208.115 212.855 0.000997409 212.474 208.051 288.13 1 0.924221 0
tcay0002.n.01 0.6452 56.324 93.2915 0.00154073 87.8756 65.0825 345.282 0 0.869944 0
tcac0006.k.23 1.2318 166.041 167.052 0.00345288 166.041 167.052 270.714 1 0.919763 0
1RT152O08_C_H04 1.7963 120.417 45.4083 0.00495979 47.6453 123.096 154.431 0 0.923812 0

Total number of rows: 9216

Table truncated, full table size 759 Kbytes.




Supplementary data files not provided
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