NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM109582 Query DataSets for GSM109582
Status Public on Jun 08, 2006
Title cplxpro31-fv
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO31 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: post-vitellogenesis
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbk0048.l.08 0.2845 60.7433 60.7848 0.00148517 60.7433 60.7848 271.159 0 0.854514 0
tcbk0023.n.15 0.4941 57.7355 82.0764 0.00214094 81.0588 57.234 341.524 0 0.878099 0
tcbi0010.o.09 0.7339 121.309 139.616 0.00120594 139.174 121.531 309.708 0 0.879563 0
tcba0006.c.15 1.1546 147.108 158.362 0.00120516 157.832 147.745 292.017 1 0.851533 0
tcay0024.j.14 1.1660 146.55 117.315 0.00245194 117.986 146.592 248.73 1 0.900408 0
tcay0002.m.19 1.2303 211.328 167.786 0.00415266 171.912 210.483 234.5 1 0.89276 0
tcac0006.k.10 5.0058 754.905 722.578 -0.00195898 724.782 753.634 264.052 1 0.890613 0
tcay0013.h.10 0.5840 118.439 93.0622 0.00311168 94.8517 119.575 242.503 0 0.916439 0
tcad0008.e.01 0.6276 98.9353 128.469 0.0013188 147.355 92.456 341.524 0 0.901707 0
tcaa0002.h.22 3.5164 280.301 306.531 0.0013188 402.507 235.368 341.524 0 0.880422 0.0394867
1RT3D5 1.7712 212.909 150.061 0.00628692 151.565 213.101 221.348 0 0.948475 0
1RT100C06_C_B03 7.0211 888.281 889.171 -0.00106312 888.281 889.171 272.917 1 0.959808 0
1RT71P07_B_H04 5.1937 575.199 553.06 0.000431477 551.968 577.98 259.314 1 0.940738 0
1RT42L04_D_F02 1.6293 54.4364 61.9266 0.0013188 86.525 44.274 341.524 0 0.7843 0
tcbk0060.i.04 0.4883 79.548 111.451 0.00223455 109.826 80.1891 341.524 0 0.886434 0
tcbk0035.l.17 0.5238 112.611 131.099 0.00201904 131.707 112.139 315.236 0 0.873492 0
tcbk0011.i.24 0.3862 95.0466 125.997 0.00253262 125.197 95.9338 330.775 0 0.888607 0
tcba0019.k.20 0.6743 131.782 131.35 0.00232923 131.782 131.35 276.712 0 0.91406 0
tcay0035.k.01 0.9614 173.182 140.488 0.0023221 140.281 173.623 247.696 1 0.900122 0
tcay0013.h.17 0.4057 93.2172 126.31 0.00189325 126.603 92.0806 341.524 0 0.893426 0

Total number of rows: 9216

Table truncated, full table size 757 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap