NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM109586 Query DataSets for GSM109586
Status Public on Jun 08, 2006
Title cplxpro30 - mat
Sample type RNA
 
Source name Preovulatory ovary Full ovarian tissue Female #PRO30 Autumn-spawning strain
Organism Oncorhynchus mykiss
Characteristics Ovarian stage: oocyte maturation
Extracted molecule total RNA
Label P33
 
Description Nylon array protocol
Data processing Low oligonucleotide signals (lower than three times the background level) were excluded from the analysis. At this step, signal processing was performed using the vector oligonucleotide data to correct each spot signal by the actual amount of DNA present in each spot. After correction, signal was normalized by dividing each gene expression value by the median value of the array.
 
Submission date May 19, 2006
Last update date Sep 08, 2006
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Platform ID GPL3650
Series (1)
GSE4871 Preovulatory ovary

Data table header descriptions
ID_REF
VALUE normalized value
QIM_CONST image signal intensity constant diameter
QFIT_VAR fit signal intensity varariable diameter
FIT_CORR fot correction
QIM_VAR image signal intensity variable diameter
QFIT_CONST fit signal intensity constant diameter
DIAM variable diameter
SPOT_QUAL spot quality
OVER_CORR overshining correction
QM quality measure

Data table
ID_REF VALUE QIM_CONST QFIT_VAR FIT_CORR QIM_VAR QFIT_CONST DIAM SPOT_QUAL OVER_CORR QM
tcbk0048.l.08 0.4125 53.6918 41.3249 0.00133047 41.6641 52.7429 230.545 0 0.874412 0
tcbk0023.n.15 0.7261 40.0135 65.4023 0.00146341 57.0515 49.2821 334.651 0 0.828262 0
tcbi0010.o.09 0.9782 84.6808 91.2534 0.00125151 89.905 84.4593 297.199 0 0.862591 0
tcba0006.c.15 1.5360 94.681 96.6078 0.00101635 96.8348 94.2147 288.136 0 0.883721 0
tcay0024.j.14 1.2689 79.6585 80.7169 0.00134362 79.6585 80.7169 282.537 0 0.903364 0
tcay0002.m.19 1.0216 83.2923 78.1398 0.00225639 77.6192 83.4131 256.749 0 0.876584 0
tcac0006.k.10 5.9804 450.711 457.79 -0.00134686 459.305 448.804 287.263 1 0.845139 0
1RT152N02_D_G01 2.9824 194.261 199.551 0.00111322 199.117 194.964 289.786 1 0.871425 0
1RT118G08_C_D04 1.7920 101.304 81.3649 0.00173428 82.0118 101.34 238.106 0 0.899697 0
1RT85F03_B_C02 2.2222 55.0821 54.403 0.00146341 74.116 36.8099 343.509 0 0.774075 0
1RT55O11_A_H06 1.3878 72.5622 56.1745 0.00214815 55.5203 72.7914 231.275 0 0.866384 0
CVU03687 0 235.723 215.374 0.000776487 215.051 237.399 253.484 1 0.92109 0
tcbk0048.l.15 0.3665 46.8525 21.162 0.00182358 21.2311 46.5563 163.941 0 0.865627 0
tcbk0023.o.12 2.0120 135.537 0 0.00458858 0 88.5483 0 1 0.744557 0
tcbi0010.o.16 0.4247 45.8676 13.0101 0.00212005 13.1558 45.1225 145.547 0 0.864494 0
tcba0006.d.08 0.8406 67.5271 31.5904 0.00249978 31.0421 67.76 167.344 0 0.886069 0
tcay0024.k.20 1.4850 103.738 117.264 0.000791334 116.974 102.558 308.97 0 0.898939 0
tcay0002.n.01 0.7097 39.2928 59.4111 0.00146341 59.5384 41.0848 343.509 0 0.866177 0
tcac0006.k.23 1.4763 124.879 82.2136 0.00209855 83.5051 125.255 205.383 1 0.918398 0
1RT152O08_C_H04 1.6284 63.5938 64.59 0.00280363 63.5938 64.59 270.356 0 0.884827 0

Total number of rows: 9216

Table truncated, full table size 748 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap